View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16017_low_2 (Length: 301)
Name: NF16017_low_2
Description: NF16017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16017_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 2564220 - 2563947
Alignment:
| Q |
13 |
catcactatgaatctttgctaagtccttcttcccaccatagaattcctagtaaaattattgagttaattctttctttggaacta---atgtttagtaaaa |
109 |
Q |
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| T |
2564220 |
catcactatgaatctttgctaagtccttcttcccaccatagaattcctagtaaaattattgagttaattctttctttggaactactaatgtttagtaaaa |
2564121 |
T |
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| Q |
110 |
gatcattagtttgttatatgtatctgtaaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcc |
209 |
Q |
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| T |
2564120 |
gatcattagtttgttatatgtatgtgtaaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcc |
2564021 |
T |
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| Q |
210 |
tgattccaaccttggttatctgtgatgtacttcaagtatttgctttctccactggccttgtataaccaagcagc |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2564020 |
tgattccaaccttggttatctgtgatgtacttcaagtacttgctttctccactggccttgtataaccaagcagc |
2563947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 136 - 279
Target Start/End: Complemental strand, 2573944 - 2573801
Alignment:
| Q |
136 |
taaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtgat |
235 |
Q |
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||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||| ||| |||||||||||||| |||||| |
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| T |
2573944 |
taaatatgaatacctgtgttagtaatgtttgagctccaacaaatttgttatcccagctaaattcagacactgcttgactccaaccttggttacttgtgat |
2573845 |
T |
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| Q |
236 |
gtacttcaagtatttgctttctccactggccttgtataaccaag |
279 |
Q |
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|||| |||||||||||||||| ||||| |||||||||| ||||| |
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| T |
2573844 |
gtacgtcaagtatttgctttccccactagccttgtatagccaag |
2573801 |
T |
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