View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16017_low_3 (Length: 268)
Name: NF16017_low_3
Description: NF16017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16017_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 7499932 - 7500166
Alignment:
| Q |
14 |
gaaggaaaacacatccaatccaattaccacaattgttctaaccatgaaaacctagtagatttaaatgaaatatttaagaattggtataaaccttttcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7499932 |
gaagtaaaacacatccaatccaattaccacaattgttctaaccatgaaaacctagtagatttaaatgaaatatttaaaaattggtataaaccttttcaat |
7500031 |
T |
|
| Q |
114 |
caaatataatcctctctccattttgaattgcattcacgagattaatgccagcttgcctccccagttctccggtcatacgctctattccaaactcaacaat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
7500032 |
caaatataatcctctctccattttgaattgcattcacgagattaatgccagcttgcctccccagttctccggtcatatgctctattccaaacacaacaat |
7500131 |
T |
|
| Q |
214 |
cctcacgtacaaccgatctcctccacctttccagc |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500132 |
cctcacgtacaaccgatctcctccacctttccagc |
7500166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University