View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16018_high_1 (Length: 494)

Name: NF16018_high_1
Description: NF16018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16018_high_1
NF16018_high_1
[»] chr8 (14 HSPs)
chr8 (19-81)||(11023438-11023500)
chr8 (292-365)||(30966069-30966142)
chr8 (101-159)||(23519422-23519480)
chr8 (302-365)||(45031373-45031436)
chr8 (309-370)||(7729945-7730006)
chr8 (321-365)||(44931213-44931257)
chr8 (302-365)||(5590380-5590443)
chr8 (302-365)||(11232206-11232269)
chr8 (302-365)||(11232441-11232504)
chr8 (309-352)||(20760664-20760707)
chr8 (302-365)||(38475756-38475819)
chr8 (323-365)||(6559482-6559524)
chr8 (302-359)||(45031164-45031221)
chr8 (310-350)||(33435942-33435982)
[»] chr1 (10 HSPs)
chr1 (101-244)||(41489548-41489691)
chr1 (292-347)||(13031128-13031183)
chr1 (101-161)||(45434722-45434782)
chr1 (304-353)||(10861742-10861792)
chr1 (303-365)||(12244975-12245037)
chr1 (323-365)||(39348385-39348427)
chr1 (292-341)||(347111-347160)
chr1 (302-359)||(31293966-31294023)
chr1 (292-352)||(17557710-17557770)
chr1 (292-340)||(41590216-41590264)
[»] chr2 (8 HSPs)
chr2 (292-352)||(33456018-33456078)
chr2 (309-365)||(93142-93198)
chr2 (309-352)||(884114-884157)
chr2 (309-352)||(3435490-3435533)
chr2 (292-365)||(22126989-22127064)
chr2 (302-365)||(28407805-28407868)
chr2 (292-346)||(3008422-3008476)
chr2 (310-352)||(27545121-27545163)
[»] chr3 (18 HSPs)
chr3 (292-345)||(39225012-39225065)
chr3 (177-244)||(14167276-14167343)
chr3 (302-365)||(22729109-22729172)
chr3 (309-352)||(31564007-31564050)
chr3 (286-341)||(49812225-49812280)
chr3 (292-346)||(38036009-38036063)
chr3 (323-364)||(1800225-1800266)
chr3 (309-350)||(19820532-19820573)
chr3 (323-364)||(20303097-20303138)
chr3 (292-329)||(21916472-21916509)
chr3 (304-365)||(23708238-23708299)
chr3 (304-365)||(23726694-23726755)
chr3 (304-365)||(23745150-23745211)
chr3 (304-365)||(24063675-24063736)
chr3 (304-349)||(37058770-37058815)
chr3 (311-352)||(40230645-40230686)
chr3 (323-372)||(50930704-50930753)
chr3 (296-332)||(45411901-45411937)
[»] scaffold0041 (1 HSPs)
scaffold0041 (302-374)||(67485-67557)
[»] chr7 (10 HSPs)
chr7 (302-374)||(40898727-40898799)
chr7 (302-365)||(29469849-29469912)
chr7 (302-364)||(1596838-1596900)
chr7 (311-365)||(4454785-4454839)
chr7 (302-365)||(29469614-29469677)
chr7 (309-364)||(31485678-31485733)
chr7 (292-346)||(25589058-25589112)
chr7 (296-338)||(27821107-27821149)
chr7 (293-347)||(39164689-39164743)
chr7 (292-337)||(39079623-39079668)
[»] chr4 (15 HSPs)
chr4 (101-161)||(14166527-14166587)
chr4 (309-365)||(31254426-31254482)
chr4 (309-365)||(27634100-27634156)
chr4 (309-352)||(35399261-35399304)
chr4 (309-352)||(35399420-35399463)
chr4 (302-365)||(35796754-35796817)
chr4 (306-352)||(25753606-25753652)
chr4 (312-350)||(39110966-39111004)
chr4 (97-142)||(20706216-20706261)
chr4 (309-358)||(27634535-27634584)
chr4 (323-364)||(37836090-37836131)
chr4 (296-353)||(46676674-46676731)
chr4 (302-359)||(50543579-50543636)
chr4 (321-365)||(17222683-17222727)
chr4 (310-374)||(21646285-21646349)
[»] chr6 (7 HSPs)
chr6 (302-365)||(27772723-27772786)
chr6 (302-359)||(6623422-6623479)
chr6 (311-347)||(4356024-4356060)
chr6 (302-365)||(13353210-13353273)
chr6 (292-347)||(19340073-19340128)
chr6 (302-365)||(33796335-33796398)
chr6 (290-339)||(5897402-5897451)
[»] chr5 (10 HSPs)
chr5 (309-352)||(21633521-21633564)
chr5 (309-352)||(21641768-21641811)
chr5 (302-365)||(19705912-19705975)
chr5 (309-352)||(30330706-30330749)
chr5 (292-359)||(30366662-30366729)
chr5 (309-364)||(30770068-30770123)
chr5 (323-372)||(60089-60138)
chr5 (301-370)||(170562-170631)
chr5 (309-358)||(6919213-6919262)
chr5 (302-358)||(5090892-5090948)
[»] scaffold0050 (2 HSPs)
scaffold0050 (309-350)||(51631-51672)
scaffold0050 (325-365)||(69568-69608)
[»] scaffold0519 (2 HSPs)
scaffold0519 (302-365)||(1925-1988)
scaffold0519 (302-365)||(2160-2223)
[»] scaffold0029 (1 HSPs)
scaffold0029 (309-352)||(76909-76952)
[»] scaffold0060 (2 HSPs)
scaffold0060 (310-352)||(13637-13679)
scaffold0060 (309-365)||(20584-20640)
[»] scaffold0010 (1 HSPs)
scaffold0010 (292-341)||(161110-161159)


Alignment Details
Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 11023500 - 11023438
Alignment:
Q  19 tgttgagacattaatatttattgtagtatgatttgttagtatctttcagaattatgatatgtt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11023500 tgttgagacattaatatttattgtagtatgatttgttagtatctttcagaattatgatttgtt 11023438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 30966069 - 30966142
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||| |||||| |||||||||| ||||||||||||| |||||||| ||||| ||||||||||| |||||    
T  30966069 ttagaatttgggttgggcctaactcaaatttacaaaaccggcttgtaaggtgaggactgcccccacttataaac 30966142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 23519422 - 23519480
Alignment:
Q  101 tatatggagcaatcacccgggtttgttgatcagggggagtcttctactatggtttgtcg 159  Q
    |||||||||||| |||| |||||||||| |||||||||||| ||||| |||||||||||    
T  23519422 tatatggagcaaccacctgggtttgttgctcagggggagtcatctaccatggtttgtcg 23519480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 45031373 - 45031436
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| |||| |||||||||||| |||||||| |||||||||||| |||| |||||    
T  45031373 ggttgggcctaacacaaccttacaaaaccggcttgtaaggtgaggattgccccgacttataaac 45031436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 7730006 - 7729945
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaacgcatg 370  Q
    ||||||||| | |||||||||||| |||| ||| ||||||||||||||||| ||||| ||||    
T  7730006 cctaactcatccttacaaaaccggcttgtgaggtgaggattgcccccacttataaacacatg 7729945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 44931213 - 44931257
Alignment:
Q  321 ttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||    
T  44931213 ttacaaaaccggcttgtgaggcgaggattgcccccacttataaac 44931257  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 5590380 - 5590443
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| |||| | |||||||||| |||| | | |||||||||||||||||||||||    
T  5590380 ggttgggcctaacacaacctcacaaaaccggcttgtgaagtgaggattgcccccacttgtaaac 5590443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 11232206 - 11232269
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| ||||   |||||||||| |||||||| ||||||||||||||||| |||||    
T  11232206 ggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaac 11232269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 11232441 - 11232504
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| ||||   |||||||||| |||||||| ||||||||||||||||| |||||    
T  11232441 ggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaac 11232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 20760664 - 20760707
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||| | ||||||||||||||||||||| ||||||||||    
T  20760664 cctaactcatccttacaaaaccggtttgtaaggtgaggattgcc 20760707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 38475819 - 38475756
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| ||||  ||||||||||| |||| ||| ||||||||||||||||| |||||    
T  38475819 ggttgggcctaacacaaccctacaaaaccggcttgtgaggtgaggattgcccccacttataaac 38475756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 6559482 - 6559524
Alignment:
Q  323 acaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||||||| |||||||| ||||||||||||||||| |||||    
T  6559482 acaaaaccggcttgtaaggtgaggattgcccccacttataaac 6559524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 45031164 - 45031221
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccactt 359  Q
    |||||| ||||||||||| |||||||||||| ||| |||| ||||||| || ||||||    
T  45031164 ggttgggcctaactcaaccttacaaaaccggcttgaaaggtgaggattacctccactt 45031221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 33435982 - 33435942
Alignment:
Q  310 ctaactcaactttacaaaaccggtttgtaaggcgaggattg 350  Q
    |||||||| |||||||||||||| |||||||| ||||||||    
T  33435982 ctaactcatctttacaaaaccggcttgtaaggtgaggattg 33435942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 41489691 - 41489548
Alignment:
Q  101 tatatggagcaatcacccgggtttgttgatcagggggagtcttctactatggtttgtcgacattacaggtctctcaatggacttaaacaatctcccaaag 200  Q
    |||||||||||| |||| |||||||||| |||||||||||| ||||| ||||||||||| |   | || || ||  |||| ||||||||||||||  |||    
T  41489691 tatatggagcaaccacctgggtttgttgctcagggggagtcatctaccatggtttgtcggctgcatagatccctttatggtcttaaacaatctcctcaag 41489592  T
Q  201 cttggtttgacatattcagcatagcaatgcaacaatttggtatg 244  Q
    ||||||||| || |||||||| || | ||||||| |||||||||    
T  41489591 cttggtttggcagattcagcacagtagtgcaacagtttggtatg 41489548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 13031128 - 13031183
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgagga 347  Q
    ||||||||| ||||||||||||||||||  ||||||||| |||||||||| |||||    
T  13031128 ttagaatttgggttggacctaactcaaccctacaaaaccagtttgtaaggtgagga 13031183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 45434782 - 45434722
Alignment:
Q  101 tatatggagcaatcacccgggtttgttgatcagggggagtcttctactatggtttgtcgac 161  Q
    |||||||||||| |||| |||||||||| ||| |||||||| |||| |||||| |||||||    
T  45434782 tatatggagcaaccacctgggtttgttgctcaaggggagtcatctaatatggtatgtcgac 45434722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 10861792 - 10861742
Alignment:
Q  304 ttggacctaactcaa-ctttacaaaaccggtttgtaaggcgaggattgccc 353  Q
    ||||||||||||||| | ||||||||||||||| ||||| |||||||||||    
T  10861792 ttggacctaactcaagccttacaaaaccggtttataaggtgaggattgccc 10861742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 12244975 - 12245037
Alignment:
Q  303 gttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||||||||| ||||   |||||||||| |||| ||| ||||||||||||||||| |||||    
T  12244975 gttggacctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaac 12245037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 39348385 - 39348427
Alignment:
Q  323 acaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||    
T  39348385 acaaaaccggtttgtgaggtgaggattgcccccacttataaac 39348427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 347160 - 347111
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaagg 341  Q
    ||||||||| |||||| ||||||||||| |||||||||| | ||||||||    
T  347160 ttagaatttgggttggccctaactcaaccttacaaaaccagcttgtaagg 347111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 31293966 - 31294023
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccactt 359  Q
    |||||| ||||||||||||||||||||| |  |||||| | ||||||||||| |||||    
T  31293966 ggttgggcctaactcaactttacaaaactgacttgtaaagtgaggattgccctcactt 31294023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 17557710 - 17557770
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||| |||||| ||||||||||| |||||||| | | |||||||| |||| |||||    
T  17557710 ttagaatttgggttgggcctaactcaaccttacaaaatcagcttgtaaggtgagggttgcc 17557770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 41590216 - 41590264
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaag 340  Q
    |||||||||||||||| || |||||||| |||||||||| | |||||||    
T  41590216 ttagaatttaggttgggccaaactcaaccttacaaaaccagcttgtaag 41590264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 33456078 - 33456018
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||||    
T  33456078 ttagaatttgggttgggcctaactcaaccttacaaaaccggtttgtaaggtgaggattgcc 33456018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 93142 - 93198
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||| | |||||||||||| |||||||| ||||| ||||||||||| |||||    
T  93142 cctaactcatccttacaaaaccggcttgtaaggtgaggagtgcccccacttataaac 93198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 884157 - 884114
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||    
T  884157 cctaactcaaccttacaaaaccggcttgtaaggtgaggattgcc 884114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 3435490 - 3435533
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||| | ||||||||||||||||||||| ||||||||||    
T  3435490 cctaactcatccttacaaaaccggtttgtaaggtgaggattgcc 3435533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 22127064 - 22126989
Alignment:
Q  292 ttagaatttaggttggacctaactcaact-ttacaaaaccggtttgtaaggcgaggattgccc-ccacttgtaaac 365  Q
    ||||||||| |||||| |||||||||||  |||||||| |||||||||||| ||||| ||||| |||||| |||||    
T  22127064 ttagaattttggttgggcctaactcaacccttacaaaatcggtttgtaaggtgaggactgcccaccacttataaac 22126989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 28407805 - 28407868
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| |||||  |||||||||| |||| ||| ||||||||||||||||| |||||    
T  28407805 ggttgggcctaacacaactccacaaaaccggcttgtgaggtgaggattgcccccacttataaac 28407868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 3008476 - 3008422
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgagg 346  Q
    ||||||||| |||||| ||||||||||| ||||||||| || |||||||| ||||    
T  3008476 ttagaatttgggttgggcctaactcaaccttacaaaactggcttgtaaggtgagg 3008422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 27545121 - 27545163
Alignment:
Q  310 ctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    |||||||| | ||||||||||||||||||||| ||||||||||    
T  27545121 ctaactcatccttacaaaaccggtttgtaaggtgaggattgcc 27545163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 39225012 - 39225065
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgag 345  Q
    ||||||||| |||||| ||||||||||| |||||| ||||||||||||||||||    
T  39225012 ttagaatttgggttgggcctaactcaaccttacaagaccggtttgtaaggcgag 39225065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 14167343 - 14167276
Alignment:
Q  177 atggacttaaacaatctcccaaagcttggtttgacatattcagcatagcaatgcaacaatttggtatg 244  Q
    |||| ||||||||||||||   |||||||||||||| ||| |||| || | |||||||||||||||||    
T  14167343 atggtcttaaacaatctcctcgagcttggtttgacaaattaagcacagtagtgcaacaatttggtatg 14167276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 22729172 - 22729109
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| |||| | |||||||||| |||| | | |||||||||||||||||||||||    
T  22729172 ggttgggcctaacacaacctcacaaaaccggcttgtgaagtgaggattgcccccacttgtaaac 22729109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 31564007 - 31564050
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||    
T  31564007 cctaactcaactttacaaaaccggcttgtaaggtgaggagtgcc 31564050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 49812280 - 49812225
Alignment:
Q  286 attatgttagaatttaggttggacctaactcaactttacaaaaccggtttgtaagg 341  Q
    ||||| ||||||||| | |||| |||||||||||||||||||| ||| ||||||||    
T  49812280 attatcttagaattttgattgggcctaactcaactttacaaaatcggcttgtaagg 49812225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 38036009 - 38036063
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgagg 346  Q
    ||||||||| ||||| || |||||||||||||||||||||  |||||||| ||||    
T  38036009 ttagaatttgggttgaacttaactcaactttacaaaaccgacttgtaaggtgagg 38036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 1800266 - 1800225
Alignment:
Q  323 acaaaaccggtttgtaaggcgaggattgcccccacttgtaaa 364  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  1800266 acaaaaccggtttgtgaggtgaggattgcccccacttataaa 1800225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 19820532 - 19820573
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattg 350  Q
    ||||||||| | ||||||||||||||||||||| ||||||||    
T  19820532 cctaactcatccttacaaaaccggtttgtaaggtgaggattg 19820573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 20303097 - 20303138
Alignment:
Q  323 acaaaaccggtttgtaaggcgaggattgcccccacttgtaaa 364  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  20303097 acaaaaccggtttgtgaggtgaggattgcccccacttataaa 20303138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 21916509 - 21916472
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaac 329  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  21916509 ttagaatttaggttggacttaactcaaccttacaaaac 21916472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 23708238 - 23708299
Alignment:
Q  304 ttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||||| |||  | |||||||||| |||| ||| ||||||||||||||||| |||||    
T  23708238 ttggacctaacacaatctcacaaaaccggcttgtgaggtgaggattgcccccacttataaac 23708299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 23726694 - 23726755
Alignment:
Q  304 ttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||||| |||  | |||||||||| |||| ||| ||||||||||||||||| |||||    
T  23726694 ttggacctaacacaatctcacaaaaccggcttgtgaggtgaggattgcccccacttataaac 23726755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 23745150 - 23745211
Alignment:
Q  304 ttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||||| |||  | |||||||||| |||| ||| ||||||||||||||||| |||||    
T  23745150 ttggacctaacacaatctcacaaaaccggcttgtgaggtgaggattgcccccacttataaac 23745211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 24063675 - 24063736
Alignment:
Q  304 ttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||||| |||  | |||||||||| |||| ||| ||||||||||||||||| |||||    
T  24063675 ttggacctaacacaatctcacaaaaccggcttgtgaggtgaggattgcccccacttataaac 24063736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 37058770 - 37058815
Alignment:
Q  304 ttggacctaactcaactttacaaaaccggtttgtaaggcgaggatt 349  Q
    |||| ||||||||| | ||||||||||||||||||||| |||||||    
T  37058770 ttgggcctaactcatccttacaaaaccggtttgtaaggtgaggatt 37058815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 40230645 - 40230686
Alignment:
Q  311 taactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||| |||||||||||| |||||||| ||||||||||    
T  40230645 taactcaaccttacaaaaccggcttgtaaggtgaggattgcc 40230686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 50930753 - 50930704
Alignment:
Q  323 acaaaaccggtttgtaaggcgaggattgcccccacttgtaaacgcatgtt 372  Q
    ||||||||| ||||| ||| ||||||||||||||||| ||||| ||||||    
T  50930753 acaaaaccgttttgtgaggtgaggattgcccccacttataaacacatgtt 50930704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 45411901 - 45411937
Alignment:
Q  296 aatttaggttggacctaactcaactttacaaaaccgg 332  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  45411901 aatttgggttggacctaactcaactttacacaaccgg 45411937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 67557 - 67485
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaacgcatgttta 374  Q
    ||||||||| ||| |||||  |||||| |||||||||||| ||||||||||||||||| ||||| ||| ||||    
T  67557 ggttggaccaaacacaactccacaaaatcggtttgtaaggtgaggattgcccccacttataaacacatattta 67485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 40898727 - 40898799
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaacgcatgttta 374  Q
    ||||||||| ||| |||||  |||||| |||||||||||| ||||||||||||||||| ||||| ||| ||||    
T  40898727 ggttggaccaaacacaactccacaaaatcggtttgtaaggtgaggattgcccccacttataaacacatattta 40898799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 29469912 - 29469849
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| |||||  |||||||||| |||||||| ||||||||||||||||| |||||    
T  29469912 ggttgggcctaacacaactccacaaaaccggcttgtaaggtgaggattgcccccacttataaac 29469849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 1596900 - 1596838
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaa 364  Q
    |||||| |||||| ||||  ||||||||||| |||||||| ||||||||||||||||| ||||    
T  1596900 ggttgggcctaacacaaccctacaaaaccggcttgtaaggtgaggattgcccccacttataaa 1596838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 4454839 - 4454785
Alignment:
Q  311 taactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||| | ||||||||||||||||| ||| ||||||||||||||||| |||||    
T  4454839 taactcatccttacaaaaccggtttgtgaggtgaggattgcccccacttataaac 4454785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 29469677 - 29469614
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| ||||   |||||||||| |||||||| ||||||||||||||||| |||||    
T  29469677 ggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaac 29469614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 31485678 - 31485733
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaa 364  Q
    |||||| |||||| |||||||||| |||| ||| ||||||||||||||||| ||||    
T  31485678 cctaacacaacttcacaaaaccggcttgtcaggtgaggattgcccccacttataaa 31485733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 25589058 - 25589112
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgagg 346  Q
    ||||||||| ||||||||||||||||   |||||||||||| |||||||| ||||    
T  25589058 ttagaatttgggttggacctaactcagtattacaaaaccggcttgtaaggagagg 25589112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 27821149 - 27821107
Alignment:
Q  296 aatttaggttggacctaactcaactttacaaaaccggtttgta 338  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||    
T  27821149 aatttgggttggacctaactcaaccttaaaaaaccggtttgta 27821107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 39164743 - 39164689
Alignment:
Q  293 tagaatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgagga 347  Q
    |||||||| |||||| ||||||||||| ||| ||||| ||||||||||| |||||    
T  39164743 tagaatttgggttgggcctaactcaaccttataaaactggtttgtaaggtgagga 39164689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 39079623 - 39079668
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgt 337  Q
    |||||| ||| ||||||||||||||||| |||||||||||| ||||    
T  39079623 ttagaacttaagttggacctaactcaaccttacaaaaccggcttgt 39079668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 14166587 - 14166527
Alignment:
Q  101 tatatggagcaatcacccgggtttgttgatcagggggagtcttctactatggtttgtcgac 161  Q
    |||||||||||| |||| |||||||||| |||||||||||| |||| |||||| |||||||    
T  14166587 tatatggagcaaccacctgggtttgttgctcagggggagtcatctaatatggtatgtcgac 14166527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 31254426 - 31254482
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||| | | ||||||||||||||||||| ||||||||||||||||| |||||    
T  31254426 cctaactcatcctcacaaaaccggtttgtaaggtgaggattgcccccacttataaac 31254482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 27634100 - 27634156
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||| | |||||||| |||||||| ||| ||||||||||||||||| |||||    
T  27634100 cctaactcatccttacaaaatcggtttgtgaggtgaggattgcccccacttataaac 27634156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 35399261 - 35399304
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||    
T  35399261 cctaactcaaccttacaaaaccggcttgtaaggtgaggattgcc 35399304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 35399420 - 35399463
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||    
T  35399420 cctaactcaaccttacaaaaccggcttgtaaggtgaggattgcc 35399463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 35796754 - 35796817
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||||| |||| |||| | |||||||||| |||| ||| ||||||||||||||||| |||||    
T  35796754 ggttggacttaacacaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaac 35796817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 25753606 - 25753652
Alignment:
Q  306 ggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    |||||||||||| | |||||||||||| |||||||| ||||||||||    
T  25753606 ggacctaactcatccttacaaaaccggcttgtaaggtgaggattgcc 25753652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 39111004 - 39110966
Alignment:
Q  312 aactcaactttacaaaaccggtttgtaaggcgaggattg 350  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  39111004 aactcaaccttacaaaaccggcttgtaaggcgaggattg 39110966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 20706216 - 20706261
Alignment:
Q  97 agattatatggagcaatcacccgggtttgttgatcagggggagtct 142  Q
    |||||||||||||||| |||| || ||||||| |||||||||||||    
T  20706216 agattatatggagcaaccacctggatttgttgctcagggggagtct 20706261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 27634535 - 27634584
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccact 358  Q
    ||||||||| | |||||||||||| |||| ||| ||||||||||||||||    
T  27634535 cctaactcatcgttacaaaaccggcttgtgaggtgaggattgcccccact 27634584  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 37836131 - 37836090
Alignment:
Q  323 acaaaaccggtttgtaaggcgaggattgcccccacttgtaaa 364  Q
    |||||||||| |||||||| ||||||||||||||||| ||||    
T  37836131 acaaaaccggcttgtaaggagaggattgcccccacttataaa 37836090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 46676731 - 46676674
Alignment:
Q  296 aatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgccc 353  Q
    ||||| ||||||||||||||||||  |||||||||   |||||||| |||||||||||    
T  46676731 aatttgggttggacctaactcaaccctacaaaaccatcttgtaaggtgaggattgccc 46676674  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 50543579 - 50543636
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccactt 359  Q
    |||||| |||||| |||||  |||||||||| |||| ||| |||||||||||||||||    
T  50543579 ggttgggcctaacacaactccacaaaaccggcttgtgaggtgaggattgcccccactt 50543636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 17222683 - 17222727
Alignment:
Q  321 ttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||||||||| |||| ||| ||||||||||||||||| |||||    
T  17222683 ttacaaaaccggcttgtgaggtgaggattgcccccacttataaac 17222727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 21646285 - 21646349
Alignment:
Q  310 ctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaacgcatgttta 374  Q
    ||||| |||| | ||||||| || |||||||| |||||||||||||| || ||||| ||||||||    
T  21646285 ctaacacaacatcacaaaactggcttgtaaggtgaggattgcccccatttataaacacatgttta 21646349  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 27772786 - 27772723
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||||||| |||||  |||||||||| |||| ||| ||||||||||||||||| |||||    
T  27772786 ggttggacctaacacaactccacaaaaccggcttgtgaggtgaggattgcccccacttataaac 27772723  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 6623422 - 6623479
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccactt 359  Q
    ||||||||||||| ||||   |||||||||| |||||||| |||||||||||||||||    
T  6623422 ggttggacctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccactt 6623479  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 4356060 - 4356024
Alignment:
Q  311 taactcaactttacaaaaccggtttgtaaggcgagga 347  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4356060 taactcaaccttacaaaaccggtttgtaaggcgagga 4356024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 13353273 - 13353210
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| ||||   |||||||||| |||||||| ||||||||||||||||| |||||    
T  13353273 ggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaac 13353210  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 19340073 - 19340128
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgagga 347  Q
    ||||||||||||||||||| |||||||| | |||||||||| || ||||| |||||    
T  19340073 ttagaatttaggttggaccaaactcaacctcacaaaaccggcttataaggtgagga 19340128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 33796398 - 33796335
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| ||||   |||||||||| |||||||| ||||||||||||||||| |||||    
T  33796398 ggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaac 33796335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 5897402 - 5897451
Alignment:
Q  290 tgttagaatttaggttggacctaactcaactttacaaaaccggtttgtaa 339  Q
    ||||||||| ||||||| | |||||||||| |||||||||||| ||||||    
T  5897402 tgttagaatataggttgaatctaactcaaccttacaaaaccggcttgtaa 5897451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 21633521 - 21633564
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  21633521 cctaactcaaccttacaaaaccggtttgtaaggtgaggattgcc 21633564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 21641768 - 21641811
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  21641768 cctaactcaaccttacaaaaccggtttgtaaggtgaggattgcc 21641811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 19705975 - 19705912
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| |||||  |||||||||| || ||||| ||||||||||||||||| |||||    
T  19705975 ggttgggcctaacacaactccacaaaaccggcttataaggtgaggattgcccccacttataaac 19705912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 30330749 - 30330706
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||| | ||||||||||||||||||||| ||||||||||    
T  30330749 cctaactcatccttacaaaaccggtttgtaaggtgaggattgcc 30330706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 30366729 - 30366662
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccactt 359  Q
    ||||||||| | |||| ||||||||||| ||||||| |||| |||||||| ||||| ||| |||||||    
T  30366729 ttagaatttggtttgggcctaactcaaccttacaaagccggcttgtaaggtgaggactgctcccactt 30366662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 30770068 - 30770123
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaa 364  Q
    ||||||||| | ||||||||||||||| | ||| ||||||||||||||||| ||||    
T  30770068 cctaactcatccttacaaaaccggtttatgaggtgaggattgcccccacttttaaa 30770123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 60138 - 60089
Alignment:
Q  323 acaaaaccggtttgtaaggcgaggattgcccccacttgtaaacgcatgtt 372  Q
    |||||||||| |||| ||| ||||||||||||||||| ||||| ||||||    
T  60138 acaaaaccggcttgtgaggtgaggattgcccccacttataaacacatgtt 60089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 370
Target Start/End: Original strand, 170562 - 170631
Alignment:
Q  301 aggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaacgcatg 370  Q
    ||||||| |||||| |||| | |||||||||| |||| ||| ||||| ||||||||||| ||||| ||||    
T  170562 aggttgggcctaacacaacctcacaaaaccggcttgtgaggtgaggactgcccccacttataaacacatg 170631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 6919213 - 6919262
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccact 358  Q
    |||||||||  ||||||||||||| || ||||| ||||||||||||||||    
T  6919213 cctaactcatatttacaaaaccggcttttaaggtgaggattgcccccact 6919262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 5090892 - 5090948
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccact 358  Q
    ||||||| ||||||||||  ||||||||||| |||||||| || |||||||| ||||    
T  5090892 ggttggatctaactcaaccctacaaaaccggattgtaaggtgaagattgccctcact 5090948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 51672 - 51631
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattg 350  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  51672 cctaactcatccttacaaaaccggtttgtaaggcgaggattg 51631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 69568 - 69608
Alignment:
Q  325 aaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||||||| ||| ||||||||||||||||| |||||    
T  69568 aaaaccggtttgtgaggtgaggattgcccccacttataaac 69608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 1988 - 1925
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| ||||   |||||||||| |||||||| ||||||||||||||||| |||||    
T  1988 ggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaac 1925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 2223 - 2160
Alignment:
Q  302 ggttggacctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    |||||| |||||| ||||   |||||||||| |||||||| ||||||||||||||||| |||||    
T  2223 ggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaac 2160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 76952 - 76909
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||    
T  76952 cctaactcatctttacaaaaccggcttgtaaggtgaggattgcc 76909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 13637 - 13679
Alignment:
Q  310 ctaactcaactttacaaaaccggtttgtaaggcgaggattgcc 352  Q
    |||||||||| |||||||||||| |||||||| ||||||||||    
T  13637 ctaactcaaccttacaaaaccggcttgtaaggtgaggattgcc 13679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 20640 - 20584
Alignment:
Q  309 cctaactcaactttacaaaaccggtttgtaaggcgaggattgcccccacttgtaaac 365  Q
    ||||||||| | |||||||||| | |||||||| |||||||||||||| || |||||    
T  20640 cctaactcatccttacaaaaccagcttgtaaggtgaggattgcccccaattataaac 20584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 161110 - 161159
Alignment:
Q  292 ttagaatttaggttggacctaactcaactttacaaaaccggtttgtaagg 341  Q
    |||||||| ||||||| |||||||||||  ||||||||| ||||||||||    
T  161110 ttagaattcaggttgggcctaactcaacgctacaaaaccagtttgtaagg 161159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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