View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16018_low_11 (Length: 209)
Name: NF16018_low_11
Description: NF16018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16018_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 2657379 - 2657244
Alignment:
| Q |
54 |
gtctttgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatggaaatttttatagttttatgatcttgtttacatac |
153 |
Q |
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| T |
2657379 |
gtctttgtttctcgtctcaatcctcc-aaccaataggatcaacgctcttgtttgcagatatcatggaaatttt-atagttttatgatcttgtttacatac |
2657282 |
T |
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| Q |
154 |
ctaccaagttaaggacgttgtataaaaatacataaact |
191 |
Q |
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| T |
2657281 |
ctaccaagttaaggacgttttataaaaatacataaact |
2657244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 2657448 - 2657411
Alignment:
| Q |
18 |
tataatcttgttacgaataaatatgatatcaaatgtgt |
55 |
Q |
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| T |
2657448 |
tataatcttgttacgaataaatatgatatcaaatgtgt |
2657411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 13163468 - 13163550
Alignment:
| Q |
59 |
tgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatggaaatttttatagttttatgatct |
142 |
Q |
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| T |
13163468 |
tgtttcccgtctcaatcctttgagccattaggatcatcactcttgtttgcagatatcatgtgaa-ttttaaagttttatgatct |
13163550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 8332144 - 8332204
Alignment:
| Q |
59 |
tgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatgg |
119 |
Q |
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| T |
8332144 |
tgtttttcgtctcaatcctctcaaccactaagatcaacactcttgtttgcagatatcatgg |
8332204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 3704846 - 3704786
Alignment:
| Q |
59 |
tgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatgg |
119 |
Q |
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| T |
3704846 |
tgtttcttgtctcaatccttcgaaccactaggatcaatgctcttgtttgcggatatcatgg |
3704786 |
T |
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