View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16018_low_3 (Length: 423)
Name: NF16018_low_3
Description: NF16018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16018_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 225 - 409
Target Start/End: Original strand, 35344908 - 35345103
Alignment:
| Q |
225 |
gattcctcaccgacgaaaacacaaatcctcaccatctcacttgaaacacaaatcctcaccgtctcactacagttaatttgtttccagt-----------t |
313 |
Q |
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| T |
35344908 |
gattcctcaccgacgaaaacaaaaatcctcaccatctcacttgaaacacaaatcctcaccgtctcactatggttaatttgtttccagttcgatcacagtt |
35345007 |
T |
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| Q |
314 |
cgaaatctttaccaaatagttactgtttcctctttctcctgttcctagttcaaaatctttatcttccttctttaatcttcatattccaccattttt |
409 |
Q |
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| T |
35345008 |
cgaaatctttaccaaatagttactgtttcctctttcacctgttcctagttcaaaatctttttcttccttctttaatcttcatcttccaccattttt |
35345103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 35344513 - 35344666
Alignment:
| Q |
8 |
cgaagaatatattcgcaacatacacccctcctcaaataataaacac--aaactaagtcgtgcaatttgcatgaaaaaacttgtcgtccactttatcattt |
105 |
Q |
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| T |
35344513 |
cgaaaaatatattcgcaacatacacccctcctcaaataataaacacacaaactaagtcgtgcaatttgcacgaaaaaacttgtcgtccactttatcattt |
35344612 |
T |
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| Q |
106 |
cctgtttttcaattaggatacaaggataaaattaagaaaaatatatacatcatt |
159 |
Q |
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| T |
35344613 |
cctgtttttcaattaggataaaaggataaaattaagaaaaatatatacatcatt |
35344666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 35349195 - 35349344
Alignment:
| Q |
8 |
cgaagaatatattcgcaacatacacccctcctcaaataataa--acacaaactaagtcgtgcaatttgcatgaaaaaacttgtcgtccactttatcattt |
105 |
Q |
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|||| |||||||||||| ||| | | |||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
35349195 |
cgaaaaatatattcgcaccatttagcactccacaaataataagcacacaaactaagtcgtgcaatttgcac-aaaaaacttgtcgtacactttatcattt |
35349293 |
T |
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| Q |
106 |
cctgtttttcaattaggatacaaggataaaattaagaaaaatatatacatca |
157 |
Q |
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| T |
35349294 |
ccc-tttttcaattaggatacaaggataaaattgagaaaaatatatacatca |
35349344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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