View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16018_low_4 (Length: 422)
Name: NF16018_low_4
Description: NF16018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16018_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 44225284 - 44225698
Alignment:
| Q |
1 |
caaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttctggaagttacttctcgaagaaagtcagcggcacctttcctttcaggaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
44225284 |
caaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttttggaagttacttcttgaagaaagtcagcagcacctttcctttcaggaca |
44225383 |
T |
|
| Q |
101 |
tttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagacaatgtcatcaaaaagatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
44225384 |
tttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagaaattaagataatgtcatcaaaaagatca |
44225483 |
T |
|
| Q |
201 |
taagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaatctgaaaagtagtggaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44225484 |
taagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaatctgaaaagtagtggaac |
44225583 |
T |
|
| Q |
301 |
tgtccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtagttacacgcttcctctgtcctccagagatacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44225584 |
tgtccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtagttacacgcttcctctgtcctccagagatacc |
44225683 |
T |
|
| Q |
401 |
acgtaacatttcatc |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44225684 |
acgtaacatttcatc |
44225698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 44236098 - 44236511
Alignment:
| Q |
1 |
caaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttctggaagttacttctcgaagaaagtcagcggcacctttcctttcaggaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44236098 |
caaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttttggaagttacttcttgaagaaagtcagcggcacctttcctttcaggaca |
44236197 |
T |
|
| Q |
101 |
tttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagacaatgtcatcaaaaagatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44236198 |
tttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagataatgtcatcaaaaagatca |
44236297 |
T |
|
| Q |
201 |
taagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaatctgaaaagtagtggaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44236298 |
taagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaatctgaaaagttgtggaac |
44236397 |
T |
|
| Q |
301 |
tgtccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtagttacacgcttcctctgtcctccagagatacc |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44236398 |
tgtccagcccagtagaaa-ttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtagttacacgcttcctctgtcctccagagatacc |
44236496 |
T |
|
| Q |
401 |
acgtaacatttcatc |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44236497 |
acgtaacatttcatc |
44236511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 415
Target Start/End: Original strand, 44213130 - 44213537
Alignment:
| Q |
8 |
gtatggttgatctctgcgcacccagtactgtgcttgatcctttctggaagttacttctcgaagaaagtcagcggcacctttcctttcaggacatttgaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
44213130 |
gtatggttgatctctgcgcacccagtactgtgcttgatcctttttggatgttacttcttgaagaaaatcagcaacacctttcctttcaggacatttgaaa |
44213229 |
T |
|
| Q |
108 |
cccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagacaatgtcatcaaaaagatcataagtct |
207 |
Q |
| |
|
||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
44213230 |
cccatagattcgaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagatattaagataatgtcatcaaaaagatcataagtct |
44213329 |
T |
|
| Q |
208 |
caggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaatctgaaaagtagtggaactgtccag |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
44213330 |
caggtgctggctggagcagtgatataactgcagtgccattcataatgtgaacatattgcctcagagagctcacaatttgaaaagttgtggaactgtccag |
44213429 |
T |
|
| Q |
308 |
cccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtagttacacgcttcctctgtcctccagagataccacgtaac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||| |
|
|
| T |
44213430 |
tccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctgtggtaacacgcttcctttgtcctccggagataccacgcaac |
44213529 |
T |
|
| Q |
408 |
atttcatc |
415 |
Q |
| |
|
|||||||| |
|
|
| T |
44213530 |
atttcatc |
44213537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 58 - 414
Target Start/End: Original strand, 2900483 - 2900839
Alignment:
| Q |
58 |
ttacttctcgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac |
157 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||| ||||||||||||||||| | || |||||||||||||||||||| ||| || || || || || || |
|
|
| T |
2900483 |
ttacttcttgaagaaagtcagctacccctttcctctcaggacatttgaaaccaactgattcaaaaaagtcaagaacatgttcacgcggtccttgatagac |
2900582 |
T |
|
| Q |
158 |
aacttggccatcagagattaagacaatgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtga |
257 |
Q |
| |
|
|| ||| ||||| || || | | ||||||||||||||| ||||||||||| ||||||||||| |||| || ||||||||||| ||||| | ||| ||| |
|
|
| T |
2900583 |
aatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctggtgctggttgaagcaaagagataactgcagttccattaagaatatga |
2900682 |
T |
|
| Q |
258 |
acatattgtctcagagagctcacaatctgaaaagtagtggaactgtccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaaca |
357 |
Q |
| |
|
|||||||| || ||||| ||||||| || ||||| ||||||||||||| |||||||| |||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
2900683 |
acatattgcctaagagatttcacaatttggaaagttgtggaactgtccaagccagtagatatttcatccatgaataaagcatttgctggtccaaccaaca |
2900782 |
T |
|
| Q |
358 |
tctctcctgtagttacacgcttcctctgtcctccagagataccacgtaacatttcat |
414 |
Q |
| |
|
| |||||||| || || ||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
2900783 |
tttctcctgtggtaactcgctttctttgtcctccggagataccacgtaacatttcat |
2900839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 58 - 414
Target Start/End: Complemental strand, 2884481 - 2884125
Alignment:
| Q |
58 |
ttacttctcgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac |
157 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||| ||||||||||||||||| | || ||||||||| ||||||| || |||||| || || ||||| || |
|
|
| T |
2884481 |
ttacttcttgaagaaagtccgctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagac |
2884382 |
T |
|
| Q |
158 |
aacttggccatcagagattaagacaatgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtga |
257 |
Q |
| |
|
|| ||| |||||||| || | | ||||||||||||||| |||||||||||||||||||||||||| | || ||||||| || ||||| | ||||||| |
|
|
| T |
2884381 |
aatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctcaggtgctggttggagtaaagagataactgtggttccattaagaatgtga |
2884282 |
T |
|
| Q |
258 |
acatattgtctcagagagctcacaatctgaaaagtagtggaactgtccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaaca |
357 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||| ||||||||||||| |||||||| |||||||||||||| |||||||| ||||| || ||||||| |
|
|
| T |
2884281 |
acatattgctgaagagatctcacaatttggaaagttgtggaactgtccaaaccagtagatatttcatccatgaataatgcatttgctggcccgaccaaca |
2884182 |
T |
|
| Q |
358 |
tctctcctgtagttacacgcttcctctgtcctccagagataccacgtaacatttcat |
414 |
Q |
| |
|
|||||||||| || || ||||| || || ||||| || |||||||| |||||||||| |
|
|
| T |
2884181 |
tctctcctgtggtaactcgctttctttgacctccggaaataccacgcaacatttcat |
2884125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 367
Target Start/End: Complemental strand, 2874487 - 2874178
Alignment:
| Q |
58 |
ttacttctcgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac |
157 |
Q |
| |
|
|||||||| |||| || ||||| | |||||||| ||||||||||||||||| || | ||||||||| |||||||||| ||| || || || ||||| || |
|
|
| T |
2874487 |
ttacttcttgaaggaaatcagcaacgcctttcctctcaggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaac |
2874388 |
T |
|
| Q |
158 |
aacttggccatcagagattaagacaatgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtga |
257 |
Q |
| |
|
|| || |||||||| | | | ||||||||||||||| ||||||||||| |||||||| || |||| ||| |||| |||||| |||| | ||| | | |
|
|
| T |
2874387 |
aatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataa |
2874288 |
T |
|
| Q |
258 |
acatattgtctcagagagctcacaatctgaaaagtagtggaactgtccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaaca |
357 |
Q |
| |
|
|||||||| || ||||| ||||||| ||||||| |||||||| || | ||||| || |||||||||||||| | | || | |||||||||||||| |
|
|
| T |
2874287 |
acatattgcctaagagatttcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaaca |
2874188 |
T |
|
| Q |
358 |
tctctcctgt |
367 |
Q |
| |
|
| |||||||| |
|
|
| T |
2874187 |
tttctcctgt |
2874178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 366
Target Start/End: Original strand, 39550630 - 39550912
Alignment:
| Q |
84 |
cctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagacaa |
183 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||| ||| ||||| ||||| || | || ||||| || ||||||| || || | |||||||| || | || |
|
|
| T |
39550630 |
cctttcctatcaggacatttaaaaccaattgattcgaaaaattcaagcacgtgctcacggggaccttggtatataatgtgactatcagagagtagaataa |
39550729 |
T |
|
| Q |
184 |
tgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaat |
283 |
Q |
| |
|
|||| |||||||||| |||||||| |||| ||| || || || || || || ||||| || || | |||||| ||| |||| ||| || ||||||| |
|
|
| T |
39550730 |
tgtcgtcaaaaagattgtaagtctctggtggtggctgaaggagcgagatgaccgcagttcctttgagaatgtggacaaattgcttcattgaattcacaat |
39550829 |
T |
|
| Q |
284 |
ctgaaaagtagtggaactgtccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctctcctg |
366 |
Q |
| |
|
||||||||| || || || |||| |||||||| |||||||||||||| | || || || ||||||||||||||||| |||| |
|
|
| T |
39550830 |
ctgaaaagttgtcgagctatccaaaccagtagatatttcatccatgaatagagctttcgccggtccaaccaacatctcccctg |
39550912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 365
Target Start/End: Complemental strand, 39360825 - 39360711
Alignment:
| Q |
251 |
aatgtgaacatattgtctcagagagctcacaatctgaaaagtagtggaactgtccagcccagtagaaatttcatccatgaacaatgcattggctggtcca |
350 |
Q |
| |
|
||||||||||||||| |||| || ||||||| |||||||| || || || |||| |||||||| |||||||||||||| || || || | |||||| |
|
|
| T |
39360825 |
aatgtgaacatattgcctcattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagtcggtcca |
39360726 |
T |
|
| Q |
351 |
accaacatctctcct |
365 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39360725 |
accaacatctctcct |
39360711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 361
Target Start/End: Complemental strand, 39334990 - 39334906
Alignment:
| Q |
277 |
tcacaatctgaaaagtagtggaactgtccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctc |
361 |
Q |
| |
|
||||||| |||||||| || || || |||| |||||||| |||||||||||||| || || || | |||||||||||||||||| |
|
|
| T |
39334990 |
tcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacatctc |
39334906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 361
Target Start/End: Complemental strand, 39346248 - 39346164
Alignment:
| Q |
277 |
tcacaatctgaaaagtagtggaactgtccagcccagtagaaatttcatccatgaacaatgcattggctggtccaaccaacatctc |
361 |
Q |
| |
|
||||||| |||||||| || || || |||| |||||||| |||||||||||||| || || || | |||||||||||||||||| |
|
|
| T |
39346248 |
tcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacatctc |
39346164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 42135561 - 42135686
Alignment:
| Q |
95 |
aggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagacaatgtcatcaaaa |
194 |
Q |
| |
|
||||||||||||||| || ||||||||||| | | |||| |||||| || || |||||||||| ||| || || || | || || |||||||||||| |
|
|
| T |
42135561 |
aggacatttgaaaccgatggtttcaaaaaactgtaacacattttcgcgtggtccttggtatacaatttgaccttctgaaagtaggataatgtcatcaaag |
42135660 |
T |
|
| Q |
195 |
agatcataagtctcaggtgctggttg |
220 |
Q |
| |
|
|| ||| | ||||| ||||||||||| |
|
|
| T |
42135661 |
agttcaaatgtctctggtgctggttg |
42135686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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