View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16018_low_5 (Length: 360)
Name: NF16018_low_5
Description: NF16018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16018_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 14812294 - 14812653
Alignment:
| Q |
1 |
agatgaagatgatgatgagtttacatttgttttcgcagatcctaaaggttcaccgatttccgctgacgatgtgttcgataaaggtcagattcgtccgann |
100 |
Q |
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| T |
14812294 |
agatgaagatgatgatgagtttacatttgttttcgcagatcctaaaggttcaccgatttccgctgacgatgtgttcgataaaggtcagattcgtccgatt |
14812393 |
T |
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| Q |
101 |
nnnnnnnnnnncggtcaggatcttcatttcaccgacgattacgataatgaatctggaaaccgttcaccggtgaggaaatttttcgtcgaatcaccgtctt |
200 |
Q |
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| T |
14812394 |
tttccttttttcggtcaggatcttcatttcaccgacgattacgataatgaatctggaaaccgttcaccggtgaggaaatttttcgtggaatcaccgtctt |
14812493 |
T |
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| Q |
201 |
cgtcgaagacagcgacgagttctgcggcggtggaaggaacttactgcgagtggaatccnnnnnnngcggtgaagagtaattcaacaggatcatcaaaact |
300 |
Q |
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| T |
14812494 |
cgtcgaagacagcgacgagttctgcggcggtggaaggaacttactgcgagtggaatccaaaaaaagcggtgaagagtaattcaacaggatcatcaaaact |
14812593 |
T |
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| Q |
301 |
atggaagttacgagatccaaagctgagaagtaacagtgacggaaaagacgcttttgtgtt |
360 |
Q |
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| T |
14812594 |
atggaagttacgagatccaaagctgagaagtaacagtgacggaaaagacgctttcgtgtt |
14812653 |
T |
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