View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16018_low_9 (Length: 222)
Name: NF16018_low_9
Description: NF16018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16018_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 44225108 - 44225304
Alignment:
| Q |
16 |
caaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctcttcgtcttgtcaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225108 |
caaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctcttcgtcttgtcaaat |
44225207 |
T |
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| Q |
116 |
ggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaatgcctcagcgaattgagtaacagttacaaatctgtatggttcatctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44225208 |
ggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaacgcctcagcgaattgagtaacagttacaaatctgtatggttgatctc |
44225304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 44235922 - 44236118
Alignment:
| Q |
16 |
caaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctcttcgtcttgtcaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44235922 |
caaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctcttcgtcttgtcaaat |
44236021 |
T |
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| Q |
116 |
ggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaatgcctcagcgaattgagtaacagttacaaatctgtatggttcatctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44236022 |
ggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaacgcctcagcgaattgagtaacagttacaaatctgtatggttgatctc |
44236118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 44212947 - 44213143
Alignment:
| Q |
16 |
caaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctcttcgtcttgtcaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44212947 |
caaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctcttcgtcttgtcaaat |
44213046 |
T |
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| Q |
116 |
ggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaatgcctcagcgaattgagtaacagttacaaatctgtatggttcatctc |
212 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||||||||||||| ||| |||||||| ||||| |
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| T |
44213047 |
ggtatggaaagctcctcagcaagtttcccaccaatatggaatgattgaaatgcctcggcaaattgagtaacagttacatatcggtatggttgatctc |
44213143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 2884822 - 2884632
Alignment:
| Q |
16 |
caaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctcttcgtcttgtcaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || ||||||| | ||| |||| ||| || || || || |||||||| |||| | |||||||||| |
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| T |
2884822 |
caaatactctcttgagaagttagcctttaacagttctttcttgttaacaccgtactttttagttgttaatgctgctggatgattcttagacttgtcaaat |
2884723 |
T |
|
| Q |
116 |
ggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaatgcctcagcgaattgagtaacagttacaaatctgtatggtt |
206 |
Q |
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|| | | |||||| || | |||||| |||| |||| | ||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
2884722 |
ggaattgcaagctcatctcctgttttccttccaacatggtatgattgaaatgcctcagcaaattgagtaacagttacaaacctgtatggtt |
2884632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 2899738 - 2899928
Alignment:
| Q |
16 |
caaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctcttcgtcttgtcaaat |
115 |
Q |
| |
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|||||| ||||||||||||||||||||||| || || ||||||| | ||| |||| ||| || || || || |||||||| |||| | |||||||||| |
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| T |
2899738 |
caaatattctcttgagaagttagcctttaacagttctttcttgttaacaccgtactttttagttgttaatgctgctggatgattcttagacttgtcaaat |
2899837 |
T |
|
| Q |
116 |
ggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaatgcctcagcgaattgagtaacagttacaaatctgtatggtt |
206 |
Q |
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|| | | |||||| || |||||| |||| |||| | ||||||||||||||||| |||||||||||||||| ||| |||||||||| |
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| T |
2899838 |
ggaattgcaagctcatctcttgttttccttccaacatggtatgattgaaatgcctcagcaaattgagtaacagttaaaaacctgtatggtt |
2899928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 2874954 - 2874853
Alignment:
| Q |
16 |
caaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctcttcgtcttgtcaaat |
115 |
Q |
| |
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|||| |||||||||||| |||||||||||| || ||| ||||||| | |||||||| ||| || || || || |||||||| | || | |||||||||| |
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| T |
2874954 |
caaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgattatttgacttgtcaaat |
2874855 |
T |
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| Q |
116 |
gg |
117 |
Q |
| |
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|| |
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| T |
2874854 |
gg |
2874853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 2874806 - 2874758
Alignment:
| Q |
164 |
aatgcctcagcgaattgagtaacagttacaaatctgtatggttcatctc |
212 |
Q |
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|||||||| || ||||||||||| |||||||| || ||||||||||||| |
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| T |
2874806 |
aatgcctctgcaaattgagtaactgttacaaacctatatggttcatctc |
2874758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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