View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16019_high_10 (Length: 309)
Name: NF16019_high_10
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16019_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 87 - 300
Target Start/End: Original strand, 12088704 - 12088912
Alignment:
| Q |
87 |
caccaacaatatcatcataattaacaatagtctcacctcatatattaacaccaccaccaccatttacgtccatataactacaccaattatgccactacaa |
186 |
Q |
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| T |
12088704 |
caccaacaatatcatcaaaattaacaatagtctcacctcatat--taacaccaccaccaccatttacgtccatataactacaccagttatgccactacaa |
12088801 |
T |
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| Q |
187 |
acttttactatatactttaagaagaaacttaacattttgccccgtcattttaattacttctaaccttaccttgtgccttaactcaccatttcctacttta |
286 |
Q |
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| T |
12088802 |
acttttactatatacatt---aagaaacttaacatttcgccccatcattttaattacttctaaccttacctagtgccttaactcaccatttcctaattta |
12088898 |
T |
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| Q |
287 |
aagtatattcatct |
300 |
Q |
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|| ||||||||||| |
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| T |
12088899 |
aattatattcatct |
12088912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12088596 - 12088639
Alignment:
| Q |
1 |
tattatcaccgtaatattcatttatcatcaccaataatcatcaa |
44 |
Q |
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| T |
12088596 |
tattatcaccgtaatattaatttatcatcaccaataatcatcaa |
12088639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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