View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16019_high_12 (Length: 304)
Name: NF16019_high_12
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16019_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 292
Target Start/End: Complemental strand, 32227782 - 32227503
Alignment:
| Q |
22 |
agatcttgatgaggaatacacttt---atcataaagtaataccaccaaattaacttaagtgagttagtatatatggactatgatttgggtttggtccata |
118 |
Q |
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|||||||||||||||| ||||||| |||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32227782 |
agatcttgatgaggaacacacttttagatcacaaggtaataccaccaaattaatctaagtgagttagtatatatggactatgatttgggtttggtccata |
32227683 |
T |
|
| Q |
119 |
catgcaagttgggttacgattggacggttagatagtgtgaggaataatttaaaaaatatattgtacataatttaattttaagttgtaatttgtaacattt |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32227682 |
tatgcaagttgggttacgattggacggttaaatagtgtgaggaataatttaaaaaatatattgtacataatttaattttaaattgtaatttgtaacattt |
32227583 |
T |
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| Q |
219 |
aacttgaac------aaataagagtgttcactttgtggtagagacttagagacaattattgaattatatatgttcttctc |
292 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32227582 |
aacttgaacaattgaaaataacagtgttcactttgtggtagagacttagagacaattattgaattatatatgttcttctc |
32227503 |
T |
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