View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16019_high_2 (Length: 609)
Name: NF16019_high_2
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16019_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 351 - 592
Target Start/End: Complemental strand, 41534002 - 41533761
Alignment:
| Q |
351 |
atgtttatgttttttcttttgtaaacttctctctgtctgttttctgaagcttactacgaacagatccctatttcttcatttttctgctcattcgatcttc |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41534002 |
atgtttatgttttttcttttgtaaacttctctctgtctgttttctgaagcttactacgaacagatccctatttcttcatttttctgctcattcgatcttc |
41533903 |
T |
|
| Q |
451 |
acgatcacgttttctgacattctcgttttcgatttcatctctttttcttataaccctcttgtctcttctattaaattatcatctcaaaattcgaacttgc |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41533902 |
acgatcacgttttctgacattctcgttttcgatttcatctctttttcttataacccttttgtctcttctattaaattatcatctcaaaattcgaacttgc |
41533803 |
T |
|
| Q |
551 |
tttcaacttcatcgattgctctgtttcttcaaaactcaattt |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41533802 |
tttcaacttcatcgattgctctgtttcttcaaaactcaattt |
41533761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 41534266 - 41534197
Alignment:
| Q |
100 |
tgatgcgcaaattagcatcatcacacacaaacaggtaatactacgcaccacactcaagataacgctaata |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41534266 |
tgatgcgcaaattagcatcatcacacacaaacaggtaatactacgcaccacactcaagataacgctaata |
41534197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 41534351 - 41534281
Alignment:
| Q |
10 |
catcatcaccaactaagcaacctcacc-----tcacgactttgattgaaagaaagaagaatttgcattacc |
75 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41534351 |
catcatcaccaacgaagcaacctcacctcacctcacgactttgattgaaagaaagaagaatttgcattacc |
41534281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 41542553 - 41542516
Alignment:
| Q |
34 |
acctcacgactttgattgaaagaaagaagaatttgcat |
71 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41542553 |
acctcacgactttgaaagaaagaaagaagaatttgcat |
41542516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University