View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16019_high_4 (Length: 427)
Name: NF16019_high_4
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16019_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 61 - 349
Target Start/End: Original strand, 48456534 - 48456830
Alignment:
| Q |
61 |
acacaaaactatccatccttcgtactgttgttctacattaatcatacttaagcagcgttgagtttagaatatcatctaatcaaa-----ctaattttact |
155 |
Q |
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| T |
48456534 |
acacaaaactatccatccttcgtactgttgttctacattaatcatacttaagcagcgttgagtttagaatatcatctaatcaaattaaactaattttact |
48456633 |
T |
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| Q |
156 |
tgcccaccaaacttgtcaaagagcatgtacgagaggaaatataatcgtgagcacacagccgtccatgaccctttggattaatttattcaattattattac |
255 |
Q |
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| T |
48456634 |
tggccaccaaacttgtcaaagaggatgtaa-acagtaaatataatcttgagcacacagccgtccatgaccctttggattaatttattcaattattattac |
48456732 |
T |
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| Q |
256 |
aattcggtttaggaacaaacaacaaaatacaagcgtttgtttttcctgtacggaatgaa----atataattagctctaaatcttctaatgattgatta |
349 |
Q |
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| T |
48456733 |
aattcggtttaggaacaaacaacaaaatacaagcgtttgtttttcctgtacggaatgaaatatatataattagctctaaatcttctaatgattgatta |
48456830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 354 - 410
Target Start/End: Original strand, 48456871 - 48456927
Alignment:
| Q |
354 |
aatatcagcttctttaacaaatcatttgtccaaatttaaaagaccacaaatgtttct |
410 |
Q |
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| T |
48456871 |
aatatcagcttctttaacaaatcatttgtccaaatttaaaacaccgcaaatgtttct |
48456927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 48456463 - 48456502
Alignment:
| Q |
21 |
tttattttatcatattatacgtagaatatgttccccaatt |
60 |
Q |
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| T |
48456463 |
tttattttatcatattatacgtagaatatgttccccaatt |
48456502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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