View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16019_low_1 (Length: 922)

Name: NF16019_low_1
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16019_low_1
NF16019_low_1
[»] chr4 (7 HSPs)
chr4 (527-903)||(43323148-43323523)
chr4 (18-154)||(10426201-10426336)
chr4 (342-418)||(52525868-52525944)
chr4 (368-467)||(30176052-30176151)
chr4 (479-536)||(43326099-43326156)
chr4 (376-492)||(11214826-11214941)
chr4 (343-393)||(47965474-47965524)
[»] chr1 (4 HSPs)
chr1 (1-188)||(24819398-24819585)
chr1 (408-475)||(6919554-6919621)
chr1 (408-475)||(38240198-38240265)
chr1 (408-475)||(27843720-27843787)
[»] chr5 (5 HSPs)
chr5 (280-447)||(40946742-40946917)
chr5 (343-474)||(16352066-16352197)
chr5 (388-475)||(29344765-29344852)
chr5 (384-475)||(4077842-4077933)
chr5 (280-364)||(4077935-4078024)
[»] chr2 (3 HSPs)
chr2 (392-475)||(38403359-38403442)
chr2 (339-475)||(26449097-26449233)
chr2 (377-475)||(22145614-22145712)
[»] chr3 (7 HSPs)
chr3 (280-429)||(44712410-44712565)
chr3 (369-475)||(43399454-43399560)
chr3 (354-431)||(45640636-45640714)
chr3 (343-418)||(32077411-32077486)
chr3 (343-419)||(51646944-51647020)
chr3 (376-431)||(52126933-52126988)
chr3 (345-418)||(46835474-46835547)
[»] chr6 (6 HSPs)
chr6 (343-477)||(23073373-23073507)
chr6 (369-475)||(18645954-18646060)
chr6 (376-431)||(34008655-34008710)
chr6 (377-477)||(20910652-20910752)
chr6 (377-477)||(20925100-20925200)
chr6 (362-431)||(9852149-9852219)
[»] chr8 (6 HSPs)
chr8 (347-447)||(26955444-26955544)
chr8 (392-475)||(38681141-38681224)
chr8 (369-475)||(8022728-8022834)
chr8 (343-418)||(30850130-30850205)
chr8 (392-469)||(38682401-38682477)
chr8 (367-418)||(27229298-27229349)
[»] chr7 (2 HSPs)
chr7 (280-337)||(18941185-18941242)
chr7 (376-431)||(24759522-24759577)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 527 - 903
Target Start/End: Complemental strand, 43323523 - 43323148
Alignment:
Q  527 ccatcagacaaatgcctaactttgttgaaagtgagtgggagataaaaattgtggaaggaaagaacagtcctttcccctacagattcgaacataagctgta 626  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43323523 ccatcagacaaatgcctaactttgttgaaagtggatgggagataaaaattgtggaaggaaagaacagtcctttcccctacagattcgaacataagctgta 43323424  T
Q  627 aagttcacacaagcatgtaaattttaaatttcaaaaattacatcgtaaatgttaaaacttgtaactatcttctgtacattgaattcatttagatcagtat 726  Q
    | ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  43323423 a-gttaacataagcatgtcaattttaaatttcaaaaattacatcgtaaatgttaaaaattgtaactatcttctgtacattgaattcatatagatcagtat 43323325  T
Q  727 gagcacactcattttctaattaaggatcaacagctaaacagatgagggcggaaaacagctaaaaagggatctgtggtcaatagcatcacaagacgaccac 826  Q
    |||| ||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43323324 gagcgcacacattttctaattaaggatcgacagccaaagagatgagggcggaaaacagctaaaaagggatctgtggtcaatagcatcacaagacgaccac 43323225  T
Q  827 aannnnnnnnacagtgccatggccctcctctttaattgggaagggctgtggccataaaatcacaatactgttatggg 903  Q
    ||        ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43323224 aaatttttttacagtgccatggccctcctctttaattgggaagggctgtggccatcaaatcacaatactgttatggg 43323148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 10426201 - 10426336
Alignment:
Q  18 gatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaaaatgcgatagagtgagaggaaaaagagaaaataatg 117  Q
    |||||||||||| || |||||| ||| ||||||  |||||||||||||||||||||| |||||||||| ||||| |||||| ||||| |||| |||||||    
T  10426201 gatcaaaactcaacgcaagggtaaagaagaaacagtagaaaaatagggtggaaggataagggaaaatgggatag-gtgagaagaaaaggagagaataatg 10426299  T
Q  118 tggagactgaacatattacgatggagcgttgaattaa 154  Q
    ||||||  | | ||||||||||| |||||||||||||    
T  10426300 tggagaacggagatattacgatgaagcgttgaattaa 10426336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 342 - 418
Target Start/End: Original strand, 52525868 - 52525944
Alignment:
Q  342 atgtttattggaaacagatggattttgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaa 418  Q
    ||||| |||||||||||||||||| ||||| |||||||| |||| |||||||||| |||||| ||||||||||||||    
T  52525868 atgttcattggaaacagatggattgtgtggtgatcaacacagatgcatctaacggtcagaacaatttggagccaaaa 52525944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 368 - 467
Target Start/End: Complemental strand, 30176151 - 30176052
Alignment:
Q  368 gtggagatcaacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggatta 467  Q
    ||||||||||||||||||| ||||||||||   ||| ||||||||||||||| ||||||||||| || |  || ||||||  ||||| ||||||||||||    
T  30176151 gtggagatcaacatagattaatctaacggctgaaacaatttggagccaaaaacttaggattagggttagaaaattagggtaagcattactgctaggatta 30176052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 536
Target Start/End: Complemental strand, 43326156 - 43326099
Alignment:
Q  479 attggggaaaataatcagaaattgaccgtggacttgattttcgtaactccatcagaca 536  Q
    ||||||||||||||||||||||||||  |||||||  |||||||||||||||||||||    
T  43326156 attggggaaaataatcagaaattgactctggacttatttttcgtaactccatcagaca 43326099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 376 - 492
Target Start/End: Complemental strand, 11214941 - 11214826
Alignment:
Q  376 caacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattagaaataaa 475  Q
    ||||||||||| |||||||||    || |||||||||||||||| ||||||||||| ||  | || ||||||  ||||  |||||||||||||| |||||    
T  11214941 caacatagattaatctaacggttgcaatgatttggagccaaaaa-ttaggattagggttaagaaattagggtaagcatcactgctaggattagatataaa 11214843  T
Q  476 aggattggggaaaataa 492  Q
    | |||  ||||||||||    
T  11214842 aagataagggaaaataa 11214826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 47965474 - 47965524
Alignment:
Q  343 tgtttattggaaacagatggattttgtggagatcaacatagattcatctaa 393  Q
    |||||||| | |||||||||||| |||||||||||||| |||| |||||||    
T  47965474 tgtttattcggaacagatggattgtgtggagatcaacacagatgcatctaa 47965524  T

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Target: chr1 (Bit Score: 180; Significance: 1e-96; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 24819585 - 24819398
Alignment:
Q  1 ttgatcagttttccgttgatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaaaatgcgatagagtgagagg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24819585 ttgatcaattttccgttgatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagagg 24819486  T
Q  101 aaaaagagaaaataatgtggagactgaacatattacgatggagcgttgaattaaaattgaatagagaggaaaagaatagcaagctcta 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24819485 aaaaagagaaaataatgtggagactgaacatattacgatggagcgttgaattaaaattgaatagagaggaaaagaatagcaagctcta 24819398  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 408 - 475
Target Start/End: Complemental strand, 6919621 - 6919554
Alignment:
Q  408 tggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattagaaataaa 475  Q
    ||||||||||||| |||| ||||   ||||||| ||| |||||||||||||||||||||||| |||||    
T  6919621 tggagccaaaaaagtagggttagaggttggcaattagagtttgcattgctgctaggattagatataaa 6919554  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 408 - 475
Target Start/End: Original strand, 38240198 - 38240265
Alignment:
Q  408 tggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattagaaataaa 475  Q
    ||||||||||||| |||| ||||   ||| ||| |||||||||||||||||||||||||||| |||||    
T  38240198 tggagccaaaaaagtagggttagaggttgacaattagggtttgcattgctgctaggattagatataaa 38240265  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 475
Target Start/End: Original strand, 27843720 - 27843787
Alignment:
Q  408 tggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattagaaataaa 475  Q
    ||||||||||||| |||| || |   ||||||| |||||||||| ||||||||||||||||| |||||    
T  27843720 tggagccaaaaaagtagggttggaggttggcaattagggtttgcgttgctgctaggattagatataaa 27843787  T

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Target: chr5 (Bit Score: 78; Significance: 8e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 280 - 447
Target Start/End: Complemental strand, 40946917 - 40946742
Alignment:
Q  280 aaagtggaggagaatat--tggagtgaagtgtacattacccatgcacttgtgacttaaaac------aaaatgtttattggaaacagatggattttgtgg 371  Q
    |||||||||||||||||  |||  ||||| |||| ||||| |||||||| ||| ||||||       ||||||||||||||||| ||||||||| ||| |    
T  40946917 aaagtggaggagaatatattggtatgaagcgtacgttaccaatgcacttatgatttaaaattgaaagaaaatgtttattggaaatagatggattgtgtag 40946818  T
Q  372 agatcaacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggt 447  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||| ||||||    
T  40946817 agatcaacatagatttatctaacggccagaatgatttggagccaaaaaattaagattagggtttggcaattagggt 40946742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 343 - 474
Target Start/End: Original strand, 16352066 - 16352197
Alignment:
Q  343 tgtttattggaaacagatggattttgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaat 442  Q
    ||||||||||||| ||||||| | || ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |    
T  16352066 tgtttattggaaagagatggaatgtgcggagatcaaaatagattcatctaacggccataacgatttggagccaaaaaataaggattagggtttggcaatt 16352165  T
Q  443 agggtttgcattgctgctaggattagaaataa 474  Q
    |||||  ||||   ||||||||||||| ||||    
T  16352166 agggtaagcatgtttgctaggattagatataa 16352197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 388 - 475
Target Start/End: Complemental strand, 29344852 - 29344765
Alignment:
Q  388 atctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattagaaataaa 475  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||| |||||    
T  29344852 atctaacggccagaacgatttggagctaaaaaattaagattagggtttgacaaatatggtttgcattgctgctaggattagatataaa 29344765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 384 - 475
Target Start/End: Complemental strand, 4077933 - 4077842
Alignment:
Q  384 attcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattagaaataaa 475  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||| |  ||||   ||||||||||||| |||||    
T  4077933 attcatctaacggccataacgatttggagccaaaaaataaggattagggtttggcaattaggataagcatgtttgctaggattagatataaa 4077842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 4078024 - 4077935
Alignment:
Q  280 aaagtggaggagaatattggagtgaagtgtacattacccatgcacttgtgactta------aaacaaaatgtttattggaaacagatggat 364  Q
    ||||| |||||||||||||| ||||||||||  ||||| ||| ||||||||||||      ||| ||| ||||||||||||||||||||||    
T  4078024 aaagtagaggagaatattggtgtgaagtgta-gttaccaatgaacttgtgacttaaaattgaaagaaattgtttattggaaacagatggat 4077935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 392 - 475
Target Start/End: Complemental strand, 38403442 - 38403359
Alignment:
Q  392 aacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattagaaataaa 475  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  38403442 aacgaccagaacgatttggagccaaaaaattaggattagggtttggcaaatagggtttgcattgctgctaggattagatataaa 38403359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 339 - 475
Target Start/End: Complemental strand, 26449233 - 26449097
Alignment:
Q  339 aaaatgtttattggaaacagatggattttgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggc 438  Q
    |||||||||||||| |||||||| ||| ||||||||||||| |||||| ||||||||| |||||  |||||||||||||||||||| |||||| ||||||    
T  26449233 aaaatgtttattgggaacagatgaattgtgtggagatcaacttagatttatctaacggtcagaataatttggagccaaaaaattagaattagggtttggc 26449134  T
Q  439 aaatagggtttgcattgctgctaggattagaaataaa 475  Q
    || ||||||  ||||   ||||||||||||| |||||    
T  26449133 aattagggtaagcatgtttgctaggattagatataaa 26449097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 377 - 475
Target Start/End: Original strand, 22145614 - 22145712
Alignment:
Q  377 aacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattagaaataaa 475  Q
    |||||||||| ||||||||||  |||| ||||||||||||||| ||||||||||| || || || ||||||  ||||| |||||||||||||| |||||    
T  22145614 aacatagattaatctaacggctggaacaatttggagccaaaaacttaggattagggttaggaaattagggtaagcattactgctaggattagatataaa 22145712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 7e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 280 - 429
Target Start/End: Original strand, 44712410 - 44712565
Alignment:
Q  280 aaagtggaggagaatattggagtgaagtgtacattacccatgcacttgtgacttaaaac-----aaaatgtttattggaaacagatggattttgtggaga 374  Q
    |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||      ||||| |||||||  || ||||||||| ||||||||    
T  44712410 aaagtggaagagaatattggtgtgaagtgtacgttaccaatgcacttgtgacttaaaattgaaaaaaatatttattgagaaaagatggattgtgtggaga 44712509  T
Q  375 tcaacatagattcatctaacggccagaacgatttggagcc-aaaaaattaggatta 429  Q
    ||||||| ||||||||||||| | | || ||||||||||| |||||||||||||||    
T  44712510 tcaacatggattcatctaacgactataatgatttggagccaaaaaaattaggatta 44712565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 369 - 475
Target Start/End: Complemental strand, 43399560 - 43399454
Alignment:
Q  369 tggagatcaacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattag 468  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||||||||| ||||||||| | || || || ||||||  ||||| |||||||||||||    
T  43399560 tggagatcaacatagattaatctaacggctggaacaatttggagccaaaaacttaggattaaggttaggaaattagggtaagcattactgctaggattag 43399461  T
Q  469 aaataaa 475  Q
    | |||||    
T  43399460 atataaa 43399454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 431
Target Start/End: Original strand, 45640636 - 45640714
Alignment:
Q  354 aacagatggattttgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaa-aattaggattagg 431  Q
    |||| ||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||||||||  ||||||||||||    
T  45640636 aacatatggattgtgtggagatcaacacagattcatctaacggtcagaactatttggagccaaaaccattaggattagg 45640714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 343 - 418
Target Start/End: Original strand, 32077411 - 32077486
Alignment:
Q  343 tgtttattggaaacagatggattttgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaa 418  Q
    |||||||||| || |||||| || |||||||||||||| | || |||||||||||||||||  |||||||||||||    
T  32077411 tgtttattgggaatagatgggttgtgtggagatcaacacaaatgcatctaacggccagaacagtttggagccaaaa 32077486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 419
Target Start/End: Complemental strand, 51647020 - 51646944
Alignment:
Q  343 tgtttattggaaacagatggattttgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaaa 419  Q
    |||||||||| |||| ||||||| |||||||||||| | |||||||||||| || |||||   ||||||||||||||    
T  51647020 tgtttattgggaacaaatggattgtgtggagatcaatacagattcatctaagggtcagaatagtttggagccaaaaa 51646944  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 52126988 - 52126933
Alignment:
Q  376 caacatagattcatctaacggccagaacgatttggagccaaaaaattaggattagg 431  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||| |||||||||||    
T  52126988 caacatagattaatccaacggctggaacgatttggagccaaaaacttaggattagg 52126933  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 418
Target Start/End: Original strand, 46835474 - 46835547
Alignment:
Q  345 tttattggaaacagatggattttgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaa 418  Q
    ||||||| ||| ||||||||| |||||||||||| | |||| |||||||| |||| |||  |||| ||||||||    
T  46835474 tttattgaaaatagatggattgtgtggagatcaataaagatgcatctaacagccacaacagtttgaagccaaaa 46835547  T

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Target: chr6 (Bit Score: 67; Significance: 3e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 343 - 477
Target Start/End: Original strand, 23073373 - 23073507
Alignment:
Q  343 tgtttattggaaacagatggattttgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaat 442  Q
    |||||||||  |||||||||||| |||||||||| ||||||||| || |||||||||||||||||||||| |||||||||||||||||| |||| ||| |    
T  23073373 tgtttattgacaacagatggattgtgtggagatctacatagatttatttaacggccagaacgatttggagacaaaaaattaggattagggtttgacaatt 23073472  T
Q  443 agggtttgcattgctgctaggattagaaataaaag 477  Q
    |||||  ||||   ||| ||||||||| |||||||    
T  23073473 agggtaagcatgtttgcaaggattagatataaaag 23073507  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 369 - 475
Target Start/End: Complemental strand, 18646060 - 18645954
Alignment:
Q  369 tggagatcaacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattag 468  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||||||||| ||||||||||| ||  | || ||||||   |||| |||||||||||||    
T  18646060 tggagatcaacatagattaatctaacggctggaacaatttggagccaaaaacttaggattagggttaagaaattagggtaaacattactgctaggattag 18645961  T
Q  469 aaataaa 475  Q
    | |||||    
T  18645960 atataaa 18645954  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 34008710 - 34008655
Alignment:
Q  376 caacatagattcatctaacggccagaacgatttggagccaaaaaattaggattagg 431  Q
    ||||||||||| ||| ||||||  ||||||||||||||||||||||||| ||||||    
T  34008710 caacatagattaatccaacggctggaacgatttggagccaaaaaattagaattagg 34008655  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 477
Target Start/End: Original strand, 20910652 - 20910752
Alignment:
Q  377 aacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattagaaataaaa 476  Q
    ||||||||||||||||||||||| ||| | |||||||||     ||||||||||| || |||||  | |||||||||   ||||||||||||| ||||||    
T  20910652 aacatagattcatctaacggccaaaacaacttggagccatttttttaggattagggttaggcaatgaaggtttgcatgtttgctaggattagatataaaa 20910751  T
Q  477 g 477  Q
    |    
T  20910752 g 20910752  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 477
Target Start/End: Original strand, 20925100 - 20925200
Alignment:
Q  377 aacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattagaaataaaa 476  Q
    ||||||||||||||||||||||| ||| | |||||||||     ||||||||||| || |||||  | |||||||||   ||||||||||||| ||||||    
T  20925100 aacatagattcatctaacggccaaaacaacttggagccatttttttaggattagggttaggcaatgaaggtttgcatgtttgctaggattagatataaaa 20925199  T
Q  477 g 477  Q
    |    
T  20925200 g 20925200  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 9852219 - 9852149
Alignment:
Q  362 gattttgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaaa-attaggattagg 431  Q
    |||| ||||||||| |||||||||| ||||||||| ||||   | ||||||||||||| ||||||||||||    
T  9852219 gattgtgtggagattaacatagattaatctaacggtcagactaaattggagccaaaaagattaggattagg 9852149  T

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Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 347 - 447
Target Start/End: Complemental strand, 26955544 - 26955444
Alignment:
Q  347 tattggaaacagatggattttgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaataggg 446  Q
    ||||||||| ||||||||| ||| |||||||||||||||| ||||||||| ||||| ||||||||| |||||||||| ||||||| |||||||| |||||    
T  26955544 tattggaaatagatggattgtgtagagatcaacatagatttatctaacggtcagaatgatttggagtcaaaaaattaagattagggtttggcaattaggg 26955445  T
Q  447 t 447  Q
    |    
T  26955444 t 26955444  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 392 - 475
Target Start/End: Complemental strand, 38681224 - 38681141
Alignment:
Q  392 aacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattagaaataaa 475  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||   ||||||||||||| |||||    
T  38681224 aacggccagaacgatttggagccaaaaaattaggattagggtttagcaaatagggtaagcatgtttgctaggattagatataaa 38681141  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 369 - 475
Target Start/End: Complemental strand, 8022834 - 8022728
Alignment:
Q  369 tggagatcaacatagattcatctaacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattag 468  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||||||||| ||||||||||| || || || ||||||   |||| |||||||||||||    
T  8022834 tggagatcaacatagattaatctaacggctggaacaatttggagccaaaaacttaggattagggttaggaaattagggtaaacattactgctaggattag 8022735  T
Q  469 aaataaa 475  Q
    | |||||    
T  8022734 atataaa 8022728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 343 - 418
Target Start/End: Original strand, 30850130 - 30850205
Alignment:
Q  343 tgtttattggaaacagatggattttgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaa 418  Q
    |||||||||| |||| || |||| |||| ||||||||| | ||| |||||||||||||||||||||||||||||||    
T  30850130 tgtttattgggaacaaatagattgtgtgtagatcaacacatattgatctaacggccagaacgatttggagccaaaa 30850205  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 38682477 - 38682401
Alignment:
Q  392 aacggccagaacgatttggagccaaaaaattaggattaggatttggcaaatagggtttgcattgctgctaggattaga 469  Q
    |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||  ||||   |||||||||||||    
T  38682477 aacggccagaacgatttggagccaaaaaattaggattagggtttagc-aatagggtaagcatgtttgctaggattaga 38682401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 27229349 - 27229298
Alignment:
Q  367 tgtggagatcaacatagattcatctaacggccagaacgatttggagccaaaa 418  Q
    |||||||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  27229349 tgtggagatcaacatagattgatctaatggccagaacaatttggagccaaaa 27229298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 18941185 - 18941242
Alignment:
Q  280 aaagtggaggagaatattggagtgaagtgtacattacccatgcacttgtgacttaaaa 337  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  18941185 aaagtggaggagaatattggtgtgaagtgtacgttaccaatgcacttgtgacttaaaa 18941242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 24759577 - 24759522
Alignment:
Q  376 caacatagattcatctaacggccagaacgatttggagccaaaaaattaggattagg 431  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||| |||||||||||    
T  24759577 caacatagattaatccaacggctggaacgatttggagccaaaaacttaggattagg 24759522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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