View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16019_low_11 (Length: 324)

Name: NF16019_low_11
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16019_low_11
NF16019_low_11
[»] chr5 (1 HSPs)
chr5 (17-308)||(37924760-37925049)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 37925049 - 37924760
Alignment:
Q  17 tcaaacaaatataaatcaaattaaagccaaaagaatgtgcttctccaatattacttgtcatgaagtgtatgcttgtgtcactgcaaagagtatcaataca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37925049 tcaaacaaatataaatcaaattaaagccaaaagaatgtgcttctccaatattacttgtcatgaagtgtatgcttgtgtcactgcaaagagtatcaataca 37924950  T
Q  117 acacaatatcagttaaactattttattcatcaaatgaaaaagattgcttgaatgnnnnnnnnnnntaaaggatgaatactaaagatgaattgaacaaaac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||           | |||||||||||||||||||||||||||||||||    
T  37924949 acacaatatcagttaaactattttattcatcaaatgaaaaagattgcttgaatg--aaaaaaaaatgaaggatgaatactaaagatgaattgaacaaaac 37924852  T
Q  217 taaaaaatagactcaaatatgagagaatatgtgactaggccttagaaagcacagattagtgcaacatatccaagttttcctttggtaattat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37924851 taaaaaatagactcaaatatgagagaatatgtgactaggccttagaaagcacagattagtgcaacatatccaagttttcctttggtaattat 37924760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University