View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16019_low_13 (Length: 306)
Name: NF16019_low_13
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16019_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 39009405 - 39009299
Alignment:
| Q |
18 |
acttaggttaacgtagttggagtctataaataggatttaaagagttttataagtggttataatctatctttttatccttttccgttttaaaattttcaat |
117 |
Q |
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| T |
39009405 |
acttaggttaacgtagttggagtctataaataggatttaaagagttttataagtggttataatctatctttctatccttttccgttttaaaattttcaat |
39009306 |
T |
|
| Q |
118 |
catgagt |
124 |
Q |
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||||||| |
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| T |
39009305 |
catgagt |
39009299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 130 - 258
Target Start/End: Complemental strand, 39008440 - 39008320
Alignment:
| Q |
130 |
ttagatcaatatgcatgcatgacctaaggaagaaagaagagcttaaaccaccaacttagtaatagactaataggtgttaccctcacattaaaggataggt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39008440 |
ttagatcaatatgcatgcatgacctaaggaagaaagaagagcttaaaccaccaacttagta--------ataggtgttaccctcacattaaaggataggt |
39008349 |
T |
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| Q |
230 |
gtctctcatctttaaagtgctaaatctat |
258 |
Q |
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||||| |||||||||||||| |||||||| |
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| T |
39008348 |
gtctcccatctttaaagtgcaaaatctat |
39008320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 42575553 - 42575590
Alignment:
| Q |
256 |
tattactccctccgtgccgaattagctgagcaattttt |
293 |
Q |
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| T |
42575553 |
tattactccctccgtcccgaattagctgagccattttt |
42575590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 7425789 - 7425828
Alignment:
| Q |
254 |
tctattactccctccgtgccgaattagctgagcaattttt |
293 |
Q |
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| T |
7425789 |
tctattactccctccgtcccgaattagctgagccattttt |
7425828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 28572399 - 28572363
Alignment:
| Q |
257 |
attactccctccgtgccgaattagctgagcaattttt |
293 |
Q |
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|||||||||||||| ||||||||||||||| |||||| |
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| T |
28572399 |
attactccctccgtcccgaattagctgagccattttt |
28572363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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