View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16019_low_15 (Length: 297)
Name: NF16019_low_15
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16019_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 100 - 275
Target Start/End: Complemental strand, 11749733 - 11749558
Alignment:
| Q |
100 |
cctccactcagcaatgtagctcctataacccaacaacaacatggacacggtttcgaatataacaacatcatcgttatcagtgacgtcactgatgacgatg |
199 |
Q |
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| T |
11749733 |
cctccactcagcaatgtagcttctataacccaacaacaacatggccacggtttcgaatataacaacatcatcgttatcagtgacgtcactgatgacgatg |
11749634 |
T |
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| Q |
200 |
attagaggaaagaaatgatagagaatcaaaatccattgcctgattatatcgttagcaatgaaagtggaactgaaag |
275 |
Q |
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| T |
11749633 |
atcagaggaaagaaatgatagagaatcaaaatccattgcttggttatatcgttagcaatgaaagtggaactgaaag |
11749558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 11749805 - 11749767
Alignment:
| Q |
19 |
gacccaagaactgaaaattccaataccaaccaaaaacaa |
57 |
Q |
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| T |
11749805 |
gacccaagaactgaaaattccaataccaaccaaaaacaa |
11749767 |
T |
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