View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16019_low_17 (Length: 261)
Name: NF16019_low_17
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16019_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 15778758 - 15778990
Alignment:
| Q |
19 |
ggaacaggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatgattttgacccaaaacagaagggacttaagctctcattcttcaatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15778758 |
ggaacaggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatgattttgacccaaaacagaagggacttaagctctcattcttcaatt |
15778857 |
T |
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| Q |
119 |
ggtggatgtcctgcattgtttttgggtcactatttgcattcacagttatagtgtatatacaagataatgtgagttggactcttggttatgctcttcaaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15778858 |
ggtggatgtcctgcattgtttttgggtcactatttgcattcacagttatagtgtatatacaagataatgtgagttggactcttggttatgctcttcaaac |
15778957 |
T |
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| Q |
219 |
aactggatttgcaatatcaatcatcacattctt |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
15778958 |
aactggatttgcaatatcaatcatcacattctt |
15778990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 15765093 - 15765325
Alignment:
| Q |
19 |
ggaacaggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatgattttgacccaaaacagaagggacttaagctctcattcttcaatt |
118 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| | || | ||||||||||||||||||||||| |
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| T |
15765093 |
ggaacaggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcattcttcaatt |
15765192 |
T |
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| Q |
119 |
ggtggatgtcctgcattgtttttgggtcactatttgcattcacagttatagtgtatatacaagataatgtgagttggactcttggttatgctcttcaaac |
218 |
Q |
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| T |
15765193 |
ggtggatgtcctacattgtcatggggtcactatttgcatttacaattctagtgtatgtacaagataatgtgagttggactcttggttatgctcttccaac |
15765292 |
T |
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| Q |
219 |
aactggatttgcaatatcaatcatcacattctt |
251 |
Q |
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| T |
15765293 |
aattggccttgcaatatcaatcatcacattctt |
15765325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 15754409 - 15754641
Alignment:
| Q |
19 |
ggaacaggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatgattttgacccaaaacagaagggacttaagctctcattcttcaatt |
118 |
Q |
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||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||| | || ||||||||||||||||||||| | |
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| T |
15754409 |
ggaacaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcattcttcaact |
15754508 |
T |
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| Q |
119 |
ggtggatgtcctgcattgtttttgggtcactatttgcattcacagttatagtgtatatacaagataatgtgagttggactcttggttatgctcttcaaac |
218 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| ||| |
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| T |
15754509 |
ggtggatgtcttgcattgtctttgggtcactatttgcattcacagttatagtgtacattcaagataatgtgggttggactcttggttatgctcttccaac |
15754608 |
T |
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| Q |
219 |
aactggatttgcaatatcaatcatcacattctt |
251 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
15754609 |
tcttggacttgcaatatcaatcatcacattctt |
15754641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 15728653 - 15728876
Alignment:
| Q |
19 |
ggaacaggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatgattttgacccaaaacagaagggacttaagctctcattcttcaatt |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||||| ||||| ||||| || || |||||||||||||| | |
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| T |
15728653 |
ggaacaggtggaacaaaacctaacatttccactattggtgctgatcaatttgatgagtttgacacaaaagagaagaaacacaaactctcattcttcaact |
15728752 |
T |
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| Q |
119 |
ggtggatgtcctgcattgtttttgggtcactatttgcattcacagttatagtgtatatacaagataatgtgagttggactcttggttatgctcttcaaac |
218 |
Q |
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||||||||| | |||| | |||| | || |||||| ||||| |||| || |||||||||||||| ||||||||||||| ||||| |||| ||| |
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| T |
15728753 |
ggtggatgttcagcatcttcattggaaccctttttgcaaattcagttttagtctacatacaagataatgttggttggactcttgggtatgcacttccaac |
15728852 |
T |
|
| Q |
219 |
aactggatttgcaatatcaatcat |
242 |
Q |
| |
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|||| |||||||||| ||||| |
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| T |
15728853 |
tcttggacttgcaatatctatcat |
15728876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 15736427 - 15736656
Alignment:
| Q |
19 |
ggaacaggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatgattttgacccaaaacagaagggacttaagctctcattcttcaatt |
118 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||||||||||| || |||||||| |||||| ||||| ||||| || ||| |||||||||||||||| |
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| T |
15736427 |
ggaacaggtggaacaaaggctaacatttccactattggtgctgatcaatttgatgagtttgacacaaaagagaagaaacataaactctcattcttcaatt |
15736526 |
T |
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| Q |
119 |
ggtggatgtcctgcattgtttttgggtcactatttgcattcacagttatagtgtatatacaagataatgtgagttggactcttggttatgctcttcaaac |
218 |
Q |
| |
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||||||||| | |||| || |||||| | || ||||| | || |||| || |||||||||||||| ||||||||||||| ||||| |||| ||| |
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| T |
15736527 |
ggtggatgttcagcatcgtctttgggactcttcttgcaaattctgtcttagtctacatacaagataatgttggttggactcttggatatgcacttccaac |
15736626 |
T |
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| Q |
219 |
aactggatttgcaatatcaatcatcacatt |
248 |
Q |
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|||| ||| |||||| ||||| ||||| |
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| T |
15736627 |
tcttggacttggaatatctatcataacatt |
15736656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 33413117 - 33412884
Alignment:
| Q |
18 |
aggaacaggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatgattttgacccaaaacagaagggacttaagctctcattcttcaat |
117 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||| | || ||| | || || ||| || ||||| |||||| |
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| T |
33413117 |
aggaacaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatgattttcatcctaaagaaaaatcacataaactttcatttttcaat |
33413018 |
T |
|
| Q |
118 |
tggtggatgtcctgcattgtttttgggtcactatttgcattcacagttatagtgtatatacaagataatgtgagttggactcttggttatgctcttcaaa |
217 |
Q |
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|||||||||| |||| | |||||| | || ||||| || ||| |||| ||||| ||||||||||| ||||||||||||| |||||| | | || |
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| T |
33413017 |
tggtggatgtttagcatcttctttgggaccctttttgctaatactgttctagtttatatccaagataatgttggttggactcttggatatgctttgccaa |
33412918 |
T |
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| Q |
218 |
caactggatttgcaatatcaatcatcacattctt |
251 |
Q |
| |
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| ||||| |||||||||||||| | |||||| |
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| T |
33412917 |
ctctaggattagcaatatcaatcatgatattctt |
33412884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 39239872 - 39239814
Alignment:
| Q |
22 |
acaggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatgattttga |
80 |
Q |
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||||||||||||||||| |||||||| || || || |||||||| |||||||| ||||| |
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| T |
39239872 |
acaggtggaaccaaacccaacatttctactatgggagctgaccaatttgatgactttga |
39239814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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