View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16019_low_19 (Length: 234)
Name: NF16019_low_19
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16019_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 1489135 - 1488932
Alignment:
| Q |
12 |
cacagaagcagaacccaattcaggattctccatcattgaaatcctcctgtgtatagcattccatttcaaattgggttttctctcataatcaagtggacca |
111 |
Q |
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| T |
1489135 |
cacagaagcagaacccaattcaggattctccatcattgaaatcctcttgtatatagcattccatttcaaattgggttttctctcataatcaagtgtacca |
1489036 |
T |
|
| Q |
112 |
taattgtgaatctttgagtttgaacaagtgacagaaacccttgctcctcctccaattacactgtcagtgtaaaagacattgaccctttgtttgaaggggg |
211 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1489035 |
taattgtgaatctttgagattgaacaagtgacagaaactcttgctccacctccaattccactgtcagtgtaaaagacattgaccctttgtttgaaggggg |
1488936 |
T |
|
| Q |
212 |
aaag |
215 |
Q |
| |
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|||| |
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| T |
1488935 |
aaag |
1488932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 11834323 - 11834532
Alignment:
| Q |
12 |
cacagaagcagaacccaattcaggattctccatcattgaaatcctcctgtgtatagcattccatttcaaattgggttttctctcataatcaagtggacca |
111 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
11834323 |
cacagaagcagaacccaattcaggattctgcatcattgaaattctcttgtatatagcattccatttcaaattgggttttctctcataatcaagagtacca |
11834422 |
T |
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| Q |
112 |
taattgtgaatctttgagtttgaacaagtgacagaaac---ccttgctcctcc---------tccaattacactgtcagtgtaaaagacattgacccttt |
199 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||| |
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| T |
11834423 |
taattgtgaatctttgaaattgaacaagtgacagaaactcttcttgctcctccaattccaattccaattccagggtcagtgtaaaagacattgacccttt |
11834522 |
T |
|
| Q |
200 |
gtttgaaggg |
209 |
Q |
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|||||||||| |
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| T |
11834523 |
gtttgaaggg |
11834532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 9033866 - 9033831
Alignment:
| Q |
12 |
cacagaagcagaacccaattcaggattctccatcat |
47 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
9033866 |
cacagaagcagaactcaattcaggattctccatcat |
9033831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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