View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16019_low_21 (Length: 222)
Name: NF16019_low_21
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16019_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 24819585 - 24819398
Alignment:
| Q |
1 |
ttgatcagttttccgttgatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaaaatgcgatagagtgagagg |
100 |
Q |
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| T |
24819585 |
ttgatcaattttccgttgatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagagg |
24819486 |
T |
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| Q |
101 |
aaaaagagaaaataatgtggagactgaacatattacgatggagcgttgaattaaaattgaatagagaggaaaagaatagcaagctcta |
188 |
Q |
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| T |
24819485 |
aaaaagagaaaataatgtggagactgaacatattacgatggagcgttgaattaaaattgaatagagaggaaaagaatagcaagctcta |
24819398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 10426201 - 10426336
Alignment:
| Q |
18 |
gatcaaaactcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaaaatgcgatagagtgagaggaaaaagagaaaataatg |
117 |
Q |
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|||||||||||| || |||||| ||| |||||| |||||||||||||||||||||| |||||||||| ||||| |||||| ||||| |||| ||||||| |
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| T |
10426201 |
gatcaaaactcaacgcaagggtaaagaagaaacagtagaaaaatagggtggaaggataagggaaaatgggatag-gtgagaagaaaaggagagaataatg |
10426299 |
T |
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| Q |
118 |
tggagactgaacatattacgatggagcgttgaattaa |
154 |
Q |
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| T |
10426300 |
tggagaacggagatattacgatgaagcgttgaattaa |
10426336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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