View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16019_low_3 (Length: 481)
Name: NF16019_low_3
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16019_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 24 - 424
Target Start/End: Original strand, 27741714 - 27742114
Alignment:
| Q |
24 |
ggtggtagtggaggaggatcgaatcgcgcgaaagcgattgggaaaatgttttttaagacgaaactatgctgtaagtttcgtgtggggacatgtccttata |
123 |
Q |
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| T |
27741714 |
ggtggtagtggaggaggatcgaatcgcgcgaaagcgattgggaaaatgttttttaagacgaaactatgctgtaagtttcgtgtggggacatgtccttata |
27741813 |
T |
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| Q |
124 |
taacgaactgtaattttgctcatagtgtggaggagcttcgtcggccgccggagaattggcaggagattgtggctgctcatgaggaagagaggagtgtgat |
223 |
Q |
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| T |
27741814 |
taacaaactgtaattttgctcatagtgtggaggagcttcgtcggccgccggagaattggcaggagattgtggctgctcatgaggaagagaggagtgtgat |
27741913 |
T |
|
| Q |
224 |
tgagcagccgagggaggagtttcagataccgacggttgggtcgagtacttttgtaggggagagtatgaataataggtcttataaggggagacattgtaag |
323 |
Q |
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| T |
27741914 |
tgagcagccgagggaggagtttcagataccgacggttgggtcgagtacttttgtaggggagagtatgaataataggtcttataaggggagacattgtaag |
27742013 |
T |
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| Q |
324 |
aaattttatactgaggaaggttgtccttatggggatagttgtacttttcttcatgatgagcaatcaaagaatcgcgaaagtgtggccattagcttaggtc |
423 |
Q |
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| T |
27742014 |
aaattttatactgaggaaggttgtccttatggggatagttgtacttttcttcatgatgagcaatcgaagaatcgtgaaagtgtggcgattagtttaggtc |
27742113 |
T |
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| Q |
424 |
c |
424 |
Q |
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| T |
27742114 |
c |
27742114 |
T |
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