View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16019_low_4 (Length: 466)

Name: NF16019_low_4
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16019_low_4
NF16019_low_4
[»] scaffold0018 (3 HSPs)
scaffold0018 (11-381)||(75078-75449)
scaffold0018 (393-450)||(75473-75530)
scaffold0018 (396-436)||(75515-75555)
[»] chr1 (1 HSPs)
chr1 (11-394)||(32620165-32620539)
[»] chr5 (5 HSPs)
chr5 (11-291)||(21974025-21974311)
chr5 (324-394)||(21974309-21974377)
chr5 (393-450)||(21974409-21974466)
chr5 (391-436)||(21974485-21974530)
chr5 (398-450)||(21974453-21974505)
[»] chr3 (5 HSPs)
chr3 (11-291)||(44479867-44480153)
chr3 (324-394)||(44479801-44479869)
chr3 (391-436)||(44479648-44479693)
chr3 (393-450)||(44479712-44479769)
chr3 (398-450)||(44479673-44479725)


Alignment Details
Target: scaffold0018 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 381
Target Start/End: Original strand, 75078 - 75449
Alignment:
Q  11 gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat 110  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  75078 gaacctgtgcagtggggttgacagctgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactggtct 75177  T
Q  111 gtacggaagagactgtgtaggtggcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatcagtattt 210  Q
    | | |||||||| |||| ||||||||||||||||| | ||   ||||||||||| | ||||||| |||||||||| |||||||||||||| ||||| |||    
T  75178 ggaaggaagagaatgtgcaggtggcttgaatttacctatgcacatagcagatttcaccagcttccttttcttattcccatttacccccacttcagtgttt 75277  T
Q  211 gttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagttaatatacatcagcatata 310  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  75278 gttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagtgaacatacatcagcatata 75377  T
Q  311 -taat-aagcaatttag-tagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttga 381  Q
     |  | ||||||||||| ||||||||||| |||||||||||  ||||| |||||||||||||||||||||||||    
T  75378 gtgctcaagcaatttagttagcatataataaacaaattagt--agcatataataaacaatttaccttcctttga 75449  T

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Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 75473 - 75530
Alignment:
Q  393 ttgagtttgaactggattagtcccctcactttgacttgcttgagtttgaactggattg 450  Q
    |||||| |||||||||||   |||| ||||||||||||||| ||||||||||||||||    
T  75473 ttgagtctgaactggattgacccccccactttgacttgcttcagtttgaactggattg 75530  T

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Target: scaffold0018; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 75515 - 75555
Alignment:
Q  396 agtttgaactggattagtcccctcactttgacttgcttgag 436  Q
    ||||||||||||||| ||| || ||||||||||||||||||    
T  75515 agtttgaactggattggtctccccactttgacttgcttgag 75555  T

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Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 32620539 - 32620165
Alignment:
Q  11 gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat 110  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |    
T  32620539 gaacctgtgcagtggggttgacagctgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgattggagctttaactggtct 32620440  T
Q  111 gtacggaagagactgtgtaggtg------gcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatca 204  Q
    | | |||||||| |||| |||||      ||||||||||||  |||   ||||||||||||| ||||||| ||||||||||  ||||||||||||| |||    
T  32620439 ggaaggaagagaatgtgcaggtgcaggtggcttgaatttaccattgcacatagcagatttaaccagcttccttttcttattctcatttacccccacttca 32620340  T
Q  205 gtatttgttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagttaatatacatcag 304  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||           ||    
T  32620339 gtgtttgttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttaagttgatgtttttctctgtcaaagt-----------ag 32620251  T
Q  305 catatataataagcaatttagtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaactt 394  Q
    |  ||||||||| ||| ||||| ||||||||| |||||||||||  ||||| ||||||||||||||||||||||||||||||| ||||||    
T  32620250 c--atataataaacaaattagttgcatataataaacaaattagt--agcatataataaacaatttaccttcctttgaactttatcaactt 32620165  T

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Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 21974025 - 21974311
Alignment:
Q  11 gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |    
T  21974025 gaacctgtgcagtggggttgacagttgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgattggagctttaactggtct 21974124  T
Q  111 gtacggaagagactgtgtaggtg------gcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatca 204  Q
    | | |||||||| |||| |||||      ||||||||||||  |||   ||||||||||||| ||||||| |||||||||| |||||||||||||| |||    
T  21974125 ggaaggaagagaatgtgcaggtgcaggtggcttgaatttaccattgcacatagcagatttaaccagcttccttttcttattcccatttacccccacttca 21974224  T
Q  205 gtatttgttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagt 291  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21974225 gtgtttgttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagt 21974311  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 21974309 - 21974377
Alignment:
Q  324 agtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaactt 394  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||    
T  21974309 agtagcatataataaacaaattagtag--catataataaacaatttaccttcctttgaactttatcaactt 21974377  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 21974409 - 21974466
Alignment:
Q  393 ttgagtttgaactggattagtcccctcactttgacttgcttgagtttgaactggattg 450  Q
    |||||| |||| |||||| | |||| ||||||||||||||| | ||||||||||||||    
T  21974409 ttgagtctgaattggattggcccccccactttgacttgcttcaatttgaactggattg 21974466  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 21974485 - 21974530
Alignment:
Q  391 acttgagtttgaactggattagtcccctcactttgacttgcttgag 436  Q
    |||| ||||||||||||||| ||| || ||||||||||||||||||    
T  21974485 acttcagtttgaactggattggtctccccactttgacttgcttgag 21974530  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 450
Target Start/End: Original strand, 21974453 - 21974505
Alignment:
Q  398 tttgaactggattagtcccctcactttgacttgcttgagtttgaactggattg 450  Q
    ||||||||||||| | |||  ||||||||||| ||| ||||||||||||||||    
T  21974453 tttgaactggattggcccctccactttgacttacttcagtttgaactggattg 21974505  T

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Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 44480153 - 44479867
Alignment:
Q  11 gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |    
T  44480153 gaacctgtgcagtggggttgacagttgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgattggagctttaactggtct 44480054  T
Q  111 gtacggaagagactgtgtaggtg------gcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatca 204  Q
    | | |||||||| |||| |||||      ||||||||||||  |||   ||||||||||||| ||||||| |||||||||| |||||||||||||| |||    
T  44480053 ggaaggaagagaatgtgcaggtgcaggtggcttgaatttaccattgcacatagcagatttaaccagcttccttttcttattcccatttacccccacttca 44479954  T
Q  205 gtatttgttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagt 291  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44479953 gtgtttgttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagt 44479867  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 44479869 - 44479801
Alignment:
Q  324 agtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaactt 394  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||    
T  44479869 agtagcatataataaacaaattagtag--catataataaacaatttaccttcctttgaactttatcaactt 44479801  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 44479693 - 44479648
Alignment:
Q  391 acttgagtttgaactggattagtcccctcactttgacttgcttgag 436  Q
    |||| ||||||||||||||| ||| || ||||||||||||||||||    
T  44479693 acttcagtttgaactggattggtctccccactttgacttgcttgag 44479648  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 44479769 - 44479712
Alignment:
Q  393 ttgagtttgaactggattagtcccctcactttgacttgcttgagtttgaactggattg 450  Q
    |||||| |||| |||||| | |||| ||||||||||||||| | ||||||||||||||    
T  44479769 ttgagtctgaattggattggcccccccactttgacttgcttcaatttgaactggattg 44479712  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 450
Target Start/End: Complemental strand, 44479725 - 44479673
Alignment:
Q  398 tttgaactggattagtcccctcactttgacttgcttgagtttgaactggattg 450  Q
    ||||||||||||| | |||  ||||||||||| ||| ||||||||||||||||    
T  44479725 tttgaactggattggcccctccactttgacttacttcagtttgaactggattg 44479673  T

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