View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16019_low_6 (Length: 426)
Name: NF16019_low_6
Description: NF16019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16019_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 156 - 411
Target Start/End: Complemental strand, 21551848 - 21551593
Alignment:
| Q |
156 |
atcactttaaagattttttatactgcactcatatatttgatcaaccagattctttttatccttaccgtgaatgttttgattctagctccatttgaagctc |
255 |
Q |
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| T |
21551848 |
atcactttaaagattttttatactgcactcatatatttgatcaaccagattcgttttatccttaccgtgaatgttttgattctagctccatttgaagttc |
21551749 |
T |
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| Q |
256 |
gggtgaatgtgcaatttcttacatatacttgttctactgtggaaaatgctccatttttgccgaggctaccaacacttgattcaccaatcccaaagagttt |
355 |
Q |
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| T |
21551748 |
gggtgaatgtgcaatttcttacatatacttgttctaccgtggaaaatgctccattttttccgaggctaccaacacttgattcaccaatcccaaagagttt |
21551649 |
T |
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| Q |
356 |
caatgtcaataaaactataaaatatataatatgataattattaaactgtgaatatt |
411 |
Q |
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| T |
21551648 |
caatgtcaataaaactataaaatatataatatgataattattaaactgtgaatatt |
21551593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 21552027 - 21551882
Alignment:
| Q |
11 |
ataatactggttaatatacacagggttcttgacttcaacaagtgtgatatcttcgtatttaatgttcctcgcatatccagatcctccctaattcaaacaa |
110 |
Q |
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| T |
21552027 |
ataattctggttaatatacacagggttctcgacttcaacaagtgtaatatcttcgtatttaatgttccttgcatatccagatccaccctaattcaaacaa |
21551928 |
T |
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| Q |
111 |
aacatgaataataatcttagactacttttaatttaggtctaactca |
156 |
Q |
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| T |
21551927 |
aacatgaataataatcttaaactacttttaatttaggtctaactca |
21551882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 38097665 - 38097587
Alignment:
| Q |
29 |
cacagggttcttgacttcaacaagtgtgatatcttcgtatttaatgttcctcgcatatccagatcctccctaattcaaa |
107 |
Q |
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| T |
38097665 |
cacaggattcttcacttcattaagtatgatatcttcgtatgtaatgttcctcgcatatccagatcctccctaattcaaa |
38097587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 38097434 - 38097287
Alignment:
| Q |
212 |
tatccttaccgtgaatgttttgattctagctccatttgaagctcgggtgaatgtgcaatttcttacatatacttgttctactgtggaaaatgctccattt |
311 |
Q |
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| T |
38097434 |
tatccttacctcaaatgtcttgattctacctccatttgaagttccggtgaatgtgcaattttgaacacgtacatcttctaccgtagcatatgaattatct |
38097335 |
T |
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| Q |
312 |
ttgccgaggctaccaacacttgattcaccaatcccaaagagtttcaat |
359 |
Q |
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| T |
38097334 |
tttccgaggctaccaacactggattcaccaatgccagtgagtttcaat |
38097287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 19056360 - 19056438
Alignment:
| Q |
32 |
agggttcttgacttcaacaagtgtgatatcttcgtatttaatgttcctcgcatatccagatcctccctaattcaaacaa |
110 |
Q |
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| T |
19056360 |
agggttcttgacttctacaagtttaatattttcgtatgtgatcttccttgcatacccacttcctccctaattcaaacaa |
19056438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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