View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1601_high_1 (Length: 439)

Name: NF1601_high_1
Description: NF1601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1601_high_1
NF1601_high_1
[»] chr7 (3 HSPs)
chr7 (63-268)||(29861496-29861701)
chr7 (309-358)||(44553736-44553785)
chr7 (309-358)||(3538387-3538436)
[»] chr2 (4 HSPs)
chr2 (65-349)||(35562975-35563260)
chr2 (62-118)||(2717843-2717899)
chr2 (62-116)||(28545018-28545072)
chr2 (78-118)||(31369530-31369570)
[»] chr5 (3 HSPs)
chr5 (62-123)||(39881618-39881679)
chr5 (311-358)||(2167148-2167195)
chr5 (78-118)||(42382175-42382215)
[»] chr3 (12 HSPs)
chr3 (59-118)||(17029655-17029714)
chr3 (64-184)||(26151419-26151539)
chr3 (62-145)||(46496861-46496944)
chr3 (60-118)||(55425666-55425724)
chr3 (61-114)||(21515259-21515312)
chr3 (62-123)||(46495493-46495554)
chr3 (62-118)||(31280968-31281024)
chr3 (62-118)||(31282599-31282655)
chr3 (309-358)||(10978989-10979038)
chr3 (60-97)||(26151310-26151347)
chr3 (62-119)||(55423392-55423449)
chr3 (65-116)||(21515645-21515695)
[»] chr8 (4 HSPs)
chr8 (64-123)||(42837698-42837757)
chr8 (309-358)||(31871801-31871850)
chr8 (309-358)||(2420928-2420977)
chr8 (83-115)||(24853392-24853424)
[»] scaffold0176 (1 HSPs)
scaffold0176 (61-123)||(16037-16099)
[»] chr4 (7 HSPs)
chr4 (62-118)||(28655569-28655625)
chr4 (62-118)||(11243815-11243871)
chr4 (62-118)||(20827587-20827643)
chr4 (62-118)||(28657210-28657266)
chr4 (78-118)||(9203561-9203601)
chr4 (78-118)||(9207780-9207820)
chr4 (86-114)||(20825458-20825486)
[»] chr1 (9 HSPs)
chr1 (309-358)||(48493827-48493876)
chr1 (64-123)||(13875104-13875163)
chr1 (309-402)||(22168209-22168303)
chr1 (21-60)||(33611715-33611754)
chr1 (64-118)||(43356839-43356893)
chr1 (62-176)||(2628268-2628382)
chr1 (62-123)||(43356941-43357002)
chr1 (309-358)||(52087613-52087662)
chr1 (78-118)||(10579677-10579717)
[»] scaffold0135 (6 HSPs)
scaffold0135 (78-118)||(5859-5899)
scaffold0135 (78-118)||(10074-10114)
scaffold0135 (78-118)||(14289-14329)
scaffold0135 (78-118)||(18504-18544)
scaffold0135 (78-118)||(22719-22759)
scaffold0135 (78-118)||(26934-26974)
[»] chr6 (1 HSPs)
chr6 (78-114)||(29677205-29677241)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 63 - 268
Target Start/End: Original strand, 29861496 - 29861701
Alignment:
Q  63 gcttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttatctttnnnnnnnttcaatttggtcccttaaatatgctatgtcag 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||| |  |||||    
T  29861496 gcttaattacataactggtcccctaacttatttgttgttttcgatttgatcccttatctttaaaaaaattcaatttggtcccttaaatatgttccgtcag 29861595  T
Q  163 tcaaattgatccattccgttagnnnnnnnatgtctaatactttagatgcgatttcagtcattaaattgcaggtccatcgtatgtaacggtgatctacgaa 262  Q
    ||||||||||||||||||||||       |||||||||| ||||||||||||||||| ||||| |||||||||||||| ||| |||  ||||||||| ||    
T  29861596 tcaaattgatccattccgttagtttttttatgtctaatattttagatgcgatttcagccattagattgcaggtccatcatatataagagtgatctaccaa 29861695  T
Q  263 taccta 268  Q
    ||||||    
T  29861696 taccta 29861701  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 44553736 - 44553785
Alignment:
Q  309 tcttcttatttatcattatcatcatatattcatacaacattcaaagaaat 358  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  44553736 tcttcttattcatcattatcatcgtatattcatccaacattcaaagaaat 44553785  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 3538436 - 3538387
Alignment:
Q  309 tcttcttatttatcattatcatcatatattcatacaacattcaaagaaat 358  Q
    |||||||||| |||| |||||||||||||||||  ||| |||||||||||    
T  3538436 tcttcttattcatcaatatcatcatatattcatctaacgttcaaagaaat 3538387  T

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Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 65 - 349
Target Start/End: Original strand, 35562975 - 35563260
Alignment:
Q  65 ttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttatctttnnnnnnnttcaatttggtcccttaaatatgctatgtcagtc 164  Q
    ||||||||||||  |||| | ||| |||| |||||||||  ||||||||||||||||||       ||||||||| ||| |||||||||||  || ||||    
T  35562975 ttaattacataaacggtctcttaatttatctgttgtttttaatttggtcccttatctttaaaaattttcaatttgatcctttaaatatgctccgtaagtc 35563074  T
Q  165 aaattgatccattccgttagnnnnnnnatgtctaatactttagatgcgatttcagtcattaaattgcaggtccatcgtatgtaacggtgatctacgaata 264  Q
    |||||| |||||||||||||       |||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||    
T  35563075 aaattgttccattccgttagtttttttatgtctaatattttagatgtgatttcagccattagattgcaggtccatcgtatgtaacggtgatctaccaata 35563174  T
Q  265 cct-annnnnnnnnnnnnnncttcatcttttccccctcatgttcttcttcttatttatcattatcatcatatattcatacaacatt 349  Q
     || |               |||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  35563175 tctaatttttttttgtttttcttcatcttttcctactcatgttattcttcttatttatcattatcatcatatattcatccaacatt 35563260  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 2717899 - 2717843
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    ||||||||||||||| || |||| ||||||||||||||||||| |||||||||||||    
T  2717899 ggcttaattacataaatgatcccttaacttatttgttgttttcaatttggtccctta 2717843  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 28545072 - 28545018
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtccct 116  Q
    ||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||    
T  28545072 ggcttaattacataaattgtcccttaatttatttgttgttttcgatttggtccct 28545018  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 31369530 - 31369570
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  31369530 tggtcccctaacttattttttgatttcgttttggtccctta 31369570  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 39881679 - 39881618
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttatcttt 123  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||    
T  39881679 ggcttaattacataattagtcccctaacttatttgttgttttcgatttggtaccttatcttt 39881618  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 2167195 - 2167148
Alignment:
Q  311 ttcttatttatcattatcatcatatattcatacaacattcaaagaaat 358  Q
    |||||||| |||| |||||||||||||| || ||||||||||||||||    
T  2167195 ttcttattcatcactatcatcatatattgatccaacattcaaagaaat 2167148  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 42382215 - 42382175
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    ||||||| |||||||||| ||| ||||||||||||||||||    
T  42382215 tggtcccttaacttattttttggtttcgatttggtccctta 42382175  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 17029655 - 17029714
Alignment:
Q  59 aatggcttaattacataactggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  17029655 aatggcttaattacataaatggtcccataacttatttgttcttttcgatttggtccctta 17029714  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 26151539 - 26151419
Alignment:
Q  64 cttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttatctttnnnnnnnttcaatttggtcccttaaatatgctatgtcagt 163  Q
    |||| |||||||| |||||| |||||||||||||| |||| |||||||||||||| |  |       ||||||| |||||||||||||||||  ||||||    
T  26151539 cttagttacataaatggtcctctaacttatttgttatttttgatttggtcccttaacactaaattttttcaattcggtcccttaaatatgctccgtcagt 26151440  T
Q  164 caaattgatccattccgttag 184  Q
    ||| ||||||||||| |||||    
T  26151439 caagttgatccattctgttag 26151419  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 46496944 - 46496861
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttatctttnnnnnnnttcaatttggtccct 145  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||| ||||       |||||||||||||||    
T  46496944 ggcttaattacataaatggtccctcaacttatttgttgttttcgatttggtcccttaactttaaaaaatttcaatttggtccct 46496861  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 55425724 - 55425666
Alignment:
Q  60 atggcttaattacataactggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||    
T  55425724 atggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtccctta 55425666  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 21515259 - 21515312
Alignment:
Q  61 tggcttaattacataactggtcccctaacttatttgttgttttcgatttggtcc 114  Q
    |||||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  21515259 tggcttaattacataaatgatcccttaacttatttgttgttttcgatttggtcc 21515312  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 46495493 - 46495554
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttatcttt 123  Q
    ||||||||||||||| | |||||  |||||||||||||||||||||||||||||||| ||||    
T  46495493 ggcttaattacataaattgtccctcaacttatttgttgttttcgatttggtcccttaacttt 46495554  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 31280968 - 31281024
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||    
T  31280968 ggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtccctta 31281024  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 31282655 - 31282599
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||| |||| |||||||  ||||||||||||||||||||| ||||||||||    
T  31282655 ggcttaattatataaatggtccctcaacttatttgttgttttcgatatggtccctta 31282599  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 10979038 - 10978989
Alignment:
Q  309 tcttcttatttatcattatcatcatatattcatacaacattcaaagaaat 358  Q
    |||||||||| |||| ||||||||||||||||| ||||||| ||||||||    
T  10979038 tcttcttattcatcaatatcatcatatattcatccaacatttaaagaaat 10978989  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 26151310 - 26151347
Alignment:
Q  60 atggcttaattacataactggtcccctaacttatttgt 97  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  26151310 atggcttaattacataaatggtcccctaacttatttgt 26151347  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 55423392 - 55423449
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttat 119  Q
    |||||||||| |||| ||||| |  ||||||||||||||||||||| |||||||||||    
T  55423392 ggcttaattatataaatggtcactcaacttatttgttgttttcgatatggtcccttat 55423449  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 21515695 - 21515645
Alignment:
Q  65 ttaattacataactggtcccctaacttatttgttgttttcgatttggtccct 116  Q
    |||||||||||| ||||||| |||||||||| || |||||||||||||||||    
T  21515695 ttaattacataaatggtcccttaacttattt-ttattttcgatttggtccct 21515645  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 42837757 - 42837698
Alignment:
Q  64 cttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttatcttt 123  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||||||    
T  42837757 cttaattgcataattagtcccctaacttatttgttgttttcgatttggtcctttatcttt 42837698  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 31871801 - 31871850
Alignment:
Q  309 tcttcttatttatcattatcatcatatattcatacaacattcaaagaaat 358  Q
    |||||||||| |||| ||||||||||||||||| |||| |||||||||||    
T  31871801 tcttcttattcatcactatcatcatatattcatccaaccttcaaagaaat 31871850  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 2420977 - 2420928
Alignment:
Q  309 tcttcttatttatcattatcatcatatattcatacaacattcaaagaaat 358  Q
    |||||||||| |||| ||||||||||||||||  ||| ||||||||||||    
T  2420977 tcttcttattcatcactatcatcatatattcacccaaaattcaaagaaat 2420928  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 24853424 - 24853392
Alignment:
Q  83 ccctaacttatttgttgttttcgatttggtccc 115  Q
    |||||||||||||||||||||| ||||||||||    
T  24853424 ccctaacttatttgttgttttcaatttggtccc 24853392  T

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Target: scaffold0176 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 16037 - 16099
Alignment:
Q  61 tggcttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttatcttt 123  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  16037 tggcttaattatataaatggtcccttaacttatttgttgttttcgatttgatcccttaacttt 16099  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 28655569 - 28655625
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||    
T  28655569 ggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtccctta 28655625  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 11243871 - 11243815
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||| |||||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  11243871 ggctaaattacataaatggtccctcaacttatttgttgttttagatttggtccctta 11243815  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 20827643 - 20827587
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    ||||||||||||||| |||||   |||||||||||||||||| ||||||| ||||||    
T  20827643 ggcttaattacataaatggtcttttaacttatttgttgtttttgatttggaccctta 20827587  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 28657266 - 28657210
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||| |||| |||||||  || |||||||||||||||||| ||||||||||    
T  28657266 ggcttaattatataaatggtccctcaatttatttgttgttttcgatatggtccctta 28657210  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 9203601 - 9203561
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  9203601 tggtcccctaacttattttttggtttcgctttggtccctta 9203561  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 9207820 - 9207780
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  9207820 tggtcccctaacttattttttggtttcgctttggtccctta 9207780  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 20825458 - 20825486
Alignment:
Q  86 taacttatttgttgttttcgatttggtcc 114  Q
    |||||||||||||||||||||||||||||    
T  20825458 taacttatttgttgttttcgatttggtcc 20825486  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 48493876 - 48493827
Alignment:
Q  309 tcttcttatttatcattatcatcatatattcatacaacattcaaagaaat 358  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  48493876 tcttcttattcatcattatcatcgtatattcatccaacattcaaagaaat 48493827  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 13875104 - 13875163
Alignment:
Q  64 cttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttatcttt 123  Q
    |||||||| |||| |||||||  |||||||||||||||||||||||| ||||||| ||||    
T  13875104 cttaattatataaatggtccctcaacttatttgttgttttcgatttgatcccttaacttt 13875163  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 402
Target Start/End: Original strand, 22168209 - 22168303
Alignment:
Q  309 tcttcttatttatcattatcatcatatattcatacaacattcaaagaaat-aagaagaaggnnnnnnnnnccataaacaatttccatcaaatcca 402  Q
    ||||| |||| |||| ||||||||||||||||| ||||||||||||||||  ||||||| |         |||||||||||||||||||||||||    
T  22168209 tcttcctattcatcactatcatcatatattcatccaacattcaaagaaatccagaagaaagaaaaagaaaccataaacaatttccatcaaatcca 22168303  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 33611715 - 33611754
Alignment:
Q  21 tcagacaagattctaaaacattgatgttatgtatattcaa 60  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  33611715 tcagacaagattttaaaacattgatgttatgtatattcaa 33611754  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 43356839 - 43356893
Alignment:
Q  64 cttaattacataactggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    ||||||||||||| ||||||   |||||||||||||||||| |||||||||||||    
T  43356839 cttaattacataaatggtccttcaacttatttgttgttttcaatttggtccctta 43356893  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 2628382 - 2628268
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttatctttnnnnnnnttcaatttggtcccttaaatatgctatgtca 161  Q
    |||||||||  |||| ||||||  ||||||||||||||||||| ||||||||||||| || |       |||  |||||||||| |||||||||  ||||    
T  2628382 ggcttaattttataaatggtcctttaacttatttgttgttttcaatttggtcccttaactctaaaaaatttccgtttggtccctcaaatatgctccgtca 2628283  T
Q  162 gtcaaattgatccat 176  Q
    | ||| |||||||||    
T  2628282 gacaatttgatccat 2628268  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 43357002 - 43356941
Alignment:
Q  62 ggcttaattacataactggtcccctaacttatttgttgttttcgatttggtcccttatcttt 123  Q
    |||||||||| |||| | |||||  ||||||||||||||||| |||||||||||||| ||||    
T  43357002 ggcttaattatataaatcgtccctcaacttatttgttgtttttgatttggtcccttaacttt 43356941  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 52087662 - 52087613
Alignment:
Q  309 tcttcttatttatcattatcatcatatattcatacaacattcaaagaaat 358  Q
    |||||||||| |||| ||||||||||||||||| |||| |||||||||||    
T  52087662 tcttcttattcatcaatatcatcatatattcatccaacgttcaaagaaat 52087613  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 10579717 - 10579677
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    ||||||| |||||||||| ||| ||||||||||||||||||    
T  10579717 tggtcccttaacttattttttggtttcgatttggtccctta 10579677  T

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Target: scaffold0135 (Bit Score: 29; Significance: 0.0000006; HSPs: 6)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 5899 - 5859
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  5899 tggtcccctaacttattttttggtttcgctttggtccctta 5859  T

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Target: scaffold0135; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 10114 - 10074
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  10114 tggtcccctaacttattttttggtttcgctttggtccctta 10074  T

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Target: scaffold0135; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 14329 - 14289
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  14329 tggtcccctaacttattttttggtttcgctttggtccctta 14289  T

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Target: scaffold0135; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 18544 - 18504
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  18544 tggtcccctaacttattttttggtttcgctttggtccctta 18504  T

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Target: scaffold0135; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 22759 - 22719
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  22759 tggtcccctaacttattttttggtttcgctttggtccctta 22719  T

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Target: scaffold0135; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 26974 - 26934
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtccctta 118  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  26974 tggtcccctaacttattttttggtttcgctttggtccctta 26934  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 29677241 - 29677205
Alignment:
Q  78 tggtcccctaacttatttgttgttttcgatttggtcc 114  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  29677241 tggtcccataacttaattgttgttttcgatttggtcc 29677205  T

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