View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1601_high_2 (Length: 376)
Name: NF1601_high_2
Description: NF1601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1601_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 6265624 - 6265838
Alignment:
| Q |
20 |
acattgatcctcctatatcatattcttatttttccacttcattggcatttatatttgacaaggttgatctctttgaactcagttgcaagtttgatattat |
119 |
Q |
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| T |
6265624 |
acattgatcctcctatatcatattcttatttttccacttcattgccatttatatttgacaaggttgatctctttgaactcagttgcaagtttgacattat |
6265723 |
T |
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| Q |
120 |
tatagcgagtatgttagaaatataatcatataccgtaaatttactgaaattacaaagtgtcactttaatacttaacacggttgattatcgtaattctgat |
219 |
Q |
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| T |
6265724 |
tatagcgagtatgttagaaatataatcatataccgtaaatttactgaaattacaaagtgtcactttaatatttaacacggttgattatcgtaattctgat |
6265823 |
T |
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| Q |
220 |
atatacatcctaata |
234 |
Q |
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| T |
6265824 |
atatacatcctaata |
6265838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 6265870 - 6265924
Alignment:
| Q |
307 |
ttaaaattaattttttattaacgaattgtgcagcaaaaatagaagtataactcat |
361 |
Q |
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| T |
6265870 |
ttaaaattaattttttattaacgaattgtgcagcaaaaatagaagtataactcat |
6265924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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