View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1601_high_9 (Length: 233)
Name: NF1601_high_9
Description: NF1601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1601_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14139228 - 14139007
Alignment:
| Q |
1 |
tttgctacagcctcaaattcttgatatgtaaattttctgttagaaacaatatcaaaaacaaaattagtttattttttcatcattttgacagtttcaaaaa |
100 |
Q |
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| T |
14139228 |
tttgctatagcctcaaattcttgatatgtaaattttctgttagaaacaatatcaaaaacaaaattagtttattttttcatcatttaggcagttttaaaaa |
14139129 |
T |
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| Q |
101 |
ctgcaataaaaactgttgattcttttttaccttcctctcttagagaatgttattatatccttctgattccatttggaaagcctaagaggttgtacaattg |
200 |
Q |
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| T |
14139128 |
ctgcaataaaaacagtagattcttttttaccttcctctcttagagaaggttattatatccttctcattccatttggaaagcctaagaggctgtacaattg |
14139029 |
T |
|
| Q |
201 |
tttcaaacctgaagtccttttt |
222 |
Q |
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|||||||| ||||||||||||| |
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| T |
14139028 |
tttcaaacttgaagtccttttt |
14139007 |
T |
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