View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1601_low_11 (Length: 226)
Name: NF1601_low_11
Description: NF1601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1601_low_11 |
 | |
|
| [»] chr6 (24 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 4458305 - 4458090
Alignment:
| Q |
7 |
ctctactctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |
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|
| T |
4458305 |
ctctactctatgttcccttctatatacaccattggcccatttgcttcttttataaatcaaagtccacaaaatcacttggcatctttaa----attccaat |
4458210 |
T |
|
| Q |
107 |
ctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctcaag |
206 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4458209 |
ctttggaaagaatatactaaatgtcttgagtggcttgaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacagttatgtctcaag |
4458110 |
T |
|
| Q |
207 |
agaagatcttagaatttgct |
226 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
4458109 |
agaagctcttagaatttgct |
4458090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 4266588 - 4266803
Alignment:
| Q |
7 |
ctctactctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
4266588 |
ctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaaatcacttggcatctttaa----attccaat |
4266683 |
T |
|
| Q |
107 |
ctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctcaag |
206 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||| | || |
|
|
| T |
4266684 |
ctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggtagcatcacagttatgtcacgag |
4266783 |
T |
|
| Q |
207 |
agaagatcttagaatttgct |
226 |
Q |
| |
|
||||| ||||||| |||||| |
|
|
| T |
4266784 |
agaagctcttagagtttgct |
4266803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 4461834 - 4461645
Alignment:
| Q |
6 |
actctactctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaa |
105 |
Q |
| |
|
|||||| | ||| ||||||||| ||||||||||||| ||| || |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
4461834 |
actctattttatattcccttctctatacaccattggtccactttcttcttttataaatcaaagtccacaaaatcacctggcatctttaa----attccaa |
4461739 |
T |
|
| Q |
106 |
tctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatg |
199 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||| | |||||||||||||| ||||||||| ||||| |
|
|
| T |
4461738 |
tctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtctatgtaaattttggcagcatcacagttatg |
4461645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 4481403 - 4481188
Alignment:
| Q |
7 |
ctctactctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaat |
106 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||| ||| | | |||| | || ||| |
|
|
| T |
4481403 |
ctctattctatattcccttctctatacaccattggtccattggcttcttttttaaatcaaagtccacaatatcacttggaaac----attagactctaat |
4481308 |
T |
|
| Q |
107 |
ctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctcaag |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
4481307 |
ctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtttatgtaaattttggcagcatcacaattatgtctcaag |
4481208 |
T |
|
| Q |
207 |
agaagatcttagaatttgct |
226 |
Q |
| |
|
|||| ||||||| |||||| |
|
|
| T |
4481207 |
agaaactcttagagtttgct |
4481188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 4470514 - 4470314
Alignment:
| Q |
6 |
actctactctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaa |
105 |
Q |
| |
|
|||||| ||||| ||||||||| ||||| ||||||| ||| || |||||||| ||||||||||| |||||||||| || |||||||||| ||| ||| |
|
|
| T |
4470514 |
actctattctatattcccttctctatacgccattggtccactttcttcttttttaaatcaaagtccacaaaatcatctagcatctttaa----atttcaa |
4470419 |
T |
|
| Q |
106 |
tctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctcaa |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| | ||||||||||| || ||| ||||| ||||||||| | |
|
|
| T |
4470418 |
tctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaagaaccaggatctgttgtctatgtaaatttcggcagcgtcacagttatgtctcca |
4470319 |
T |
|
| Q |
206 |
gagaa |
210 |
Q |
| |
|
||||| |
|
|
| T |
4470318 |
gagaa |
4470314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 4575017 - 4574803
Alignment:
| Q |
8 |
tctactctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaatc |
107 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||||| ||||| |||||||| ||||||||||| |||||||| || || |||||||| | || |||| |
|
|
| T |
4575017 |
tctattctatgttcccttctctatacacaattggtccattagcttcttttgtaaatcaaagtccacaaaatgacttgacatctttag----actctaatc |
4574922 |
T |
|
| Q |
108 |
tttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctcaaga |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| || ||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||| ||| |
|
|
| T |
4574921 |
tttggaaagaagatactaaatgtcttgaatggattgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcatcactgttatgtctcgaga |
4574822 |
T |
|
| Q |
208 |
gaagatcttagaatttgct |
226 |
Q |
| |
|
|||| || |||| |||||| |
|
|
| T |
4574821 |
gaagctcgtagagtttgct |
4574803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 4561213 - 4561014
Alignment:
| Q |
8 |
tctactctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaatc |
107 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||| || |||||||| | | |||| |
|
|
| T |
4561213 |
tctattctatgttcccttctctatacacaattggtccattagcttcttttgtaaatcaaagtccacaaaatcacttgacatctttag----actgtaatc |
4561118 |
T |
|
| Q |
108 |
tttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctcaaga |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
4561117 |
tttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtttatgtaaattttggcagcatcactgttaagtctcaaga |
4561018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 4514549 - 4514735
Alignment:
| Q |
13 |
tctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaatctttgg |
112 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| |||| ||| | ||||||||| ||||||||||| ||| ||||||| | |||||||||||| |
|
|
| T |
4514549 |
tctatgctcccttctctatacaccattggcccatttgcttcgtttttgaatcaaagtccacaaaatcacttggaatctttaggt----tccaatctttgg |
4514644 |
T |
|
| Q |
113 |
aaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctc |
203 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||||||||||| || |||||| ||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
4514645 |
aaagaagatactaaatgtcttgaatggcttgaatcaaaagaatcaggatctgttgtttatgttaattttggtagcatcacgattatgtctc |
4514735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 3172445 - 3172252
Alignment:
| Q |
13 |
tctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaatctttgg |
112 |
Q |
| |
|
||||| ||||||||| ||||||| ||||| || || |||| ||| ||| ||||||| | ||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
3172445 |
tctatattcccttctctatacacaattggtccgttcgcttcgtttttaagtcaaagtccgcaaaatcacttggcatctttag----attctaatctttgg |
3172350 |
T |
|
| Q |
113 |
aaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctcaagagaa |
210 |
Q |
| |
|
||||||||| ||||||||||||| |||||| || |||||||| |||| |||||| |||||||||||||||| ||||||| | |||||||||||||||| |
|
|
| T |
3172349 |
aaagaagatactaaatgtcttgaatggcttgaaacaaaagaatcaaaatctgttgtttatgtaaattttggcagcatcatagttatgtctcaagagaa |
3172252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 4489783 - 4489991
Alignment:
| Q |
13 |
tctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaatctttgg |
112 |
Q |
| |
|
||||| ||||||||| ||||||| |||||||||||| |||||||| || |||||| | || |||||||| || ||||||| | || ||||||||| |
|
|
| T |
4489783 |
tctatattcccttctgtatacacaattggcccattttcttcttttttagatcaaattccagaaaatcacttgaaatctttag----actctaatctttgg |
4489878 |
T |
|
| Q |
113 |
aaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctcaagagaaga |
212 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
4489879 |
aaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtttatgtaaattttggcagcatcactgttatgtctcgagagaagc |
4489978 |
T |
|
| Q |
213 |
tcttagaatttgc |
225 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
4489979 |
tattagagtttgc |
4489991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 4503831 - 4504015
Alignment:
| Q |
19 |
ttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaatctttggaaagaa |
118 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| |||||||| ||||||||||| |||||||| || || |||||||| | || ||||||||||||||| |
|
|
| T |
4503831 |
ttcccttctctatacacaattggtccattagcttcttttgtaaatcaaagtccacaaaatgacttgacatctttag----actctaatctttggaaagaa |
4503926 |
T |
|
| Q |
119 |
gatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctcaaga |
207 |
Q |
| |
|
||| ||||||||||||| |||||| ||| |||||||||| |||||| |||||||||||||||| ||||| ||| |||||||| |||| |
|
|
| T |
4503927 |
gatactaaatgtcttgattggcttgaattaaaagaaccaggatctgttgtttatgtaaattttggcagcattacagttatgtcttaaga |
4504015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 4506559 - 4506375
Alignment:
| Q |
15 |
tatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaatctttggaa |
114 |
Q |
| |
|
|||||| |||||| ||||||| |||||||| || ||||| ||| ||||||||||| |||||||||| | ||| ||||| |||| ||||||||||| |
|
|
| T |
4506559 |
tatgtttccttctctatacactattggccctttaacttcatttgtaaatcaaagtccacaaaatcagtttgcaactttag----attcaaatctttggaa |
4506464 |
T |
|
| Q |
115 |
agaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctc |
203 |
Q |
| |
|
||| ||| |||||||||| || ||||| ||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
4506463 |
agaggatactaaatgtctcgaatggctggaatcaaaagaaccggcttctgttgtttatgtgaattttggaagcatcacaattatgtctc |
4506375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 4598873 - 4598703
Alignment:
| Q |
15 |
tatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaatctttggaa |
114 |
Q |
| |
|
||||||||||| ||| || |||||||||| || |||| ||| ||||||||||| |||||| || ||||||||||| || ||||||||||||| |
|
|
| T |
4598873 |
tatgttcccttgtatttatgccattggccctttatcttcgtttttaaatcaaagtcaacaaaagcatttggcatctttaggta----ccaatctttggaa |
4598778 |
T |
|
| Q |
115 |
agaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcat |
189 |
Q |
| |
|
||||||| | || |||||||| |||||| |||| || ||||||| ||||||| ||||||| |||||||| ||||| |
|
|
| T |
4598777 |
agaagataccaagtgtcttgactggcttgaatccaatgaaccaaggtctgttgtttatgtgaattttgggagcat |
4598703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 4259576 - 4259764
Alignment:
| Q |
7 |
ctctactctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaat |
106 |
Q |
| |
|
||||| ||||||||||||||| |||| | ||||| || || |||| || ||||||||| | |||| |||||||||||||| ||| | |||||| |
|
|
| T |
4259576 |
ctctattctatgttcccttctttatatgctattggacctttaccttcattattaaatcaaactccacataatcacctggcatcgttaggt----tccaat |
4259671 |
T |
|
| Q |
107 |
ctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatg |
199 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||||| ||| || ||||| |||||||| |||| || |||||||| ||||| ||| ||||| |
|
|
| T |
4259672 |
ctttggaaagaagataccaaatgtcttgaatggcttgaatttaaggaacctgagtctgttgtttacgtgaattttggcagcattacagttatg |
4259764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 4586335 - 4586169
Alignment:
| Q |
18 |
gttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaatctttggaaaga |
117 |
Q |
| |
|
|||||||||||| || |||||||||| || | || ||| ||||||||||| ||||||| ||| | |||||||||| || | |||||||||||||| |
|
|
| T |
4586335 |
gttcccttctatttatgccattggccctttatcatcatttttaaatcaaagtccacaaaaccacttagcatctttaagtaca----aatctttggaaaga |
4586240 |
T |
|
| Q |
118 |
agatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagca |
188 |
Q |
| |
|
||| | || |||||||| |||||| ||||||| ||||| | ||| ||| ||||||| |||||||| |||| |
|
|
| T |
4586239 |
ggataccaagtgtcttgattggcttgaatcaaaggaaccgaggtccgttgtttatgtgaattttgggagca |
4586169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 4613196 - 4613318
Alignment:
| Q |
63 |
tcaaagtacacaaaatcacctggcatctttaattaaattccaatctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtc |
162 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| || |||||||||||||||||||| | || |||||||| |||||| |||| || ||||| ||||| |
|
|
| T |
4613196 |
tcaaagtccacaaaatcacttggcaagtttaagta----ccaatctttggaaagaagataccaagtgtcttgattggcttgaatccaaggaaccgaagtc |
4613291 |
T |
|
| Q |
163 |
tgttatttatgtaaattttggaagcat |
189 |
Q |
| |
|
||| ||||||| |||||||| ||||| |
|
|
| T |
4613292 |
cgttgtttatgtgaattttgggagcat |
4613318 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 4256135 - 4256234
Alignment:
| Q |
100 |
ttccaatctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatg |
199 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||| |||||| |||| || ||||| |||||||| |||| || |||||||| ||||| ||| ||||| |
|
|
| T |
4256135 |
ttccaatctttggaaagaagataccaagtgtcttgaatggcttgaatccaaggaacctgagtctgttgtttacgtgaattttggcagcattacagttatg |
4256234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 4299243 - 4299379
Alignment:
| Q |
7 |
ctctactctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaat |
106 |
Q |
| |
|
||||| ||||||||||||||| |||| || ||||| || || |||| || ||||||||| | |||| |||||| ||| ||||||| | |||||| |
|
|
| T |
4299243 |
ctctattctatgttcccttctttatatactattggacctttaccttcattattaaatcaaactccacataatcacttggaatctttaggt----tccaat |
4299338 |
T |
|
| Q |
107 |
ctttggaaagaagatgctaaatgtcttgagtggcttcaatc |
147 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||||| |||| |
|
|
| T |
4299339 |
ctttggaaagaagataccaaatgtcttgaatggcttgaatc |
4299379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 4626572 - 4626489
Alignment:
| Q |
100 |
ttccaatctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttgg |
183 |
Q |
| |
|
||||||||||||||||||||| | || |||||||| |||||| ||| || ||||||||||||||| ||||||| || ||||| |
|
|
| T |
4626572 |
ttccaatctttggaaagaagacaccaattgtcttgaatggcttgaattcaaggaaccaaagtctgttgtttatgtgaactttgg |
4626489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 188
Target Start/End: Complemental strand, 4571591 - 4571505
Alignment:
| Q |
102 |
ccaatctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagca |
188 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||| ||||||| ||||| | ||| ||| ||||||| |||||||| |||| |
|
|
| T |
4571591 |
ccaatctttggaaagaagataacaagtgtcttgattggcttgaatcaaaggaaccgaggtccgttgtttatgtgaattttgggagca |
4571505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 4516938 - 4516850
Alignment:
| Q |
104 |
aatctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcac |
192 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| |||| || |||| | ||||| ||||||| ||||||||||||||||| |
|
|
| T |
4516938 |
aatctttggaaagaagatatgaaatgtcttgaatggcttgaatctaaggaacaaggttctgtagtttatgtgaattttggaagcatcac |
4516850 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 4557744 - 4557647
Alignment:
| Q |
102 |
ccaatctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatg |
199 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||||| |||| || ||||| | ||| ||| ||||||| |||||||| ||||| ||| ||||| |
|
|
| T |
4557744 |
ccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatg |
4557647 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 4580051 - 4579970
Alignment:
| Q |
102 |
ccaatctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttgg |
183 |
Q |
| |
|
||||| |||||||||||||| | || |||||| | |||||| |||| || ||||| | ||||||| ||||||| |||||||| |
|
|
| T |
4580051 |
ccaatttttggaaagaagataccaagtgtctttattggcttgaatccaaggaacctaggtctgttgtttatgtgaattttgg |
4579970 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 4622761 - 4622705
Alignment:
| Q |
100 |
ttccaatctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaacc |
156 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| |||| || ||||| |
|
|
| T |
4622761 |
ttccaatctttggaaagaagatatcaagtgtcttgagtggcttgaatccaaggaacc |
4622705 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 24103709 - 24103494
Alignment:
| Q |
7 |
ctctactctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
24103709 |
ctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaaatcacttggcatctttaa----attccaat |
24103614 |
T |
|
| Q |
107 |
ctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctcaag |
206 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||| || ||| |||||||||||||||| ||||||||| ||||||| | || |
|
|
| T |
24103613 |
ctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaagaaccaagatcagttgtttatgtaaattttggtagcatcacagttatgtcacgag |
24103514 |
T |
|
| Q |
207 |
agaagatcttagaatttgct |
226 |
Q |
| |
|
||||| ||||||| |||||| |
|
|
| T |
24103513 |
agaagctcttagagtttgct |
24103494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 20863265 - 20863410
Alignment:
| Q |
7 |
ctctactctatgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaat |
106 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||| |||| |||||| |||| |||||| |||| | | |
|
|
| T |
20863265 |
ctctattctatgttcccttctctatacaccattggcccttttgtttcttttttaaatcaaagtccacagaatcacttggcgtctttag----attcaagt |
20863360 |
T |
|
| Q |
107 |
ctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaacc |
156 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||| |||| |||||||| |
|
|
| T |
20863361 |
ctttggaaagaagacactgaatgtcttgcatggcttgaatcgaaagaacc |
20863410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 16685781 - 16685877
Alignment:
| Q |
103 |
caatctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatg |
199 |
Q |
| |
|
||||||||||||| ||||| | || |||||||| |||||| |||| || ||||| | || ||| ||||||| |||||||| ||||| ||| ||||| |
|
|
| T |
16685781 |
caatctttggaaataagataccaagtgtcttgattggcttgaatccaaggaaccgagttccgttgtttatgtgaattttgggagcatgacagttatg |
16685877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 4197 - 4296
Alignment:
| Q |
100 |
ttccaatctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatg |
199 |
Q |
| |
|
|||||||||||||||||||||| | || ||||||||||||||| ||| || ||||| |||| ||| ||||||| |||||||||||||| ||| ||||| |
|
|
| T |
4197 |
ttccaatctttggaaagaagataccaagtgtcttgagtggcttgcatccaaggaacctgagtcggttgtttatgtgaattttggaagcattacagttatg |
4296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 3087120 - 3086933
Alignment:
| Q |
17 |
tgttcccttctatatacaccattggcccatttacttcttttataaatcaaagtacacaaaatcacctggcatctttaattaaattccaatctttggaaag |
116 |
Q |
| |
|
|||||||||| |||| |||||||| ||||| |||| | ||||||||| | |||| |||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
3087120 |
tgttcccttcattatataccattggaccattaccttcactactaaatcaaacttcacataatcacttggcatctttaggt----tccaatctttggaaag |
3087025 |
T |
|
| Q |
117 |
aagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatgtctcaagag |
208 |
Q |
| |
|
||||| | || |||||||| |||||| ||||||| | || |||||||| ||||||| | |||||| ||||| ||| ||||| |||||||| |
|
|
| T |
3087024 |
aagataccaagtgtcttgaatggcttgaatcaaagggacttgagtctgttgtttatgtgagttttggcagcattacagttatgactcaagag |
3086933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 3230 - 3329
Alignment:
| Q |
100 |
ttccaatctttggaaagaagatgctaaatgtcttgagtggcttcaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacatttatg |
199 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||| ||||| |||| || ||||| |||||||| ||||||| ||||| || ||||| ||| ||||| |
|
|
| T |
3230 |
ttccaatctttggaaagaagataccaagtgtcttgaatggctcgaatccaaggaacctgagtctgttgtttatgtgaatttcggcagcattacagttatg |
3329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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