View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1601_low_12 (Length: 224)

Name: NF1601_low_12
Description: NF1601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1601_low_12
NF1601_low_12
[»] chr4 (8 HSPs)
chr4 (1-148)||(9601208-9601355)
chr4 (1-112)||(9571413-9571524)
chr4 (5-112)||(9604647-9604754)
chr4 (149-204)||(2917952-2918007)
chr4 (149-201)||(51513128-51513180)
chr4 (149-204)||(28323073-28323128)
chr4 (149-201)||(46672856-46672908)
chr4 (149-189)||(4939936-4939976)
[»] chr8 (3 HSPs)
chr8 (149-205)||(29247170-29247226)
chr8 (166-198)||(28535210-28535242)
chr8 (153-197)||(33619647-33619691)
[»] chr7 (9 HSPs)
chr7 (149-205)||(46913457-46913513)
chr7 (150-204)||(41969778-41969832)
chr7 (149-197)||(28998020-28998068)
chr7 (152-201)||(42897753-42897802)
chr7 (147-187)||(36617052-36617092)
chr7 (150-205)||(19815109-19815164)
chr7 (152-193)||(46358015-46358056)
chr7 (149-194)||(46457998-46458043)
chr7 (166-198)||(38663020-38663052)
[»] chr1 (9 HSPs)
chr1 (149-205)||(2123852-2123908)
chr1 (149-205)||(38740983-38741039)
chr1 (149-205)||(33403424-33403480)
chr1 (149-201)||(50158589-50158641)
chr1 (166-205)||(32940712-32940751)
chr1 (147-197)||(37187909-37187959)
chr1 (166-203)||(5458825-5458862)
chr1 (156-201)||(29702453-29702498)
chr1 (166-198)||(18431711-18431743)
[»] chr3 (12 HSPs)
chr3 (149-204)||(498029-498084)
chr3 (149-204)||(50385857-50385912)
chr3 (149-205)||(53446021-53446077)
chr3 (149-195)||(49430633-49430679)
chr3 (149-197)||(22418553-22418601)
chr3 (149-201)||(43055605-43055657)
chr3 (166-205)||(24758601-24758640)
chr3 (166-205)||(24767598-24767637)
chr3 (156-205)||(29694309-29694358)
chr3 (166-198)||(2125281-2125313)
chr3 (166-198)||(26555493-26555525)
chr3 (166-198)||(28211742-28211774)
[»] chr5 (8 HSPs)
chr5 (149-203)||(34225676-34225730)
chr5 (149-205)||(25981135-25981191)
chr5 (149-204)||(3058960-3059015)
chr5 (149-205)||(14396093-14396155)
chr5 (147-198)||(18113834-18113885)
chr5 (152-198)||(424832-424878)
chr5 (171-205)||(39421044-39421078)
chr5 (153-201)||(2197413-2197464)
[»] chr6 (4 HSPs)
chr6 (156-204)||(595534-595582)
chr6 (150-201)||(841944-841995)
chr6 (166-195)||(13850509-13850538)
chr6 (166-198)||(5014169-5014201)
[»] chr2 (1 HSPs)
chr2 (146-201)||(37622825-37622880)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 9601355 - 9601208
Alignment:
Q  1 tttaaaatgtttccagttgttttagcttccaatttccaatttttatagtacatgtatactcaagcttgtgaactcacatagaagttagttttgcactaaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||    
T  9601355 tttaaaatgtttccaattgttttagcttccaatttccaatttttatagtacatgtatactcaagcttgtgaactcacatagaagtttgttttccattaaa 9601256  T
Q  101 catcatagaattaacatgcatttataccatttgttgttgaccttctac 148  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9601255 catcacagaattaacatgcatttataccatttgttgttgaccttctac 9601208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 9571413 - 9571524
Alignment:
Q  1 tttaaaatgtttccagttgttttagcttccaatttccaatttttatagtacatgtatactcaagcttgtgaactcacatagaagttagttttgcactaaa 100  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || ||||    
T  9571413 tttaacatgtttctagttgtttcagcttccaatttccaatttttatagtacatgtacactcaagcttgtgaactaacatagaagtttgttttccattaaa 9571512  T
Q  101 catcatagaatt 112  Q
    ||||| ||||||    
T  9571513 catcacagaatt 9571524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 9604754 - 9604647
Alignment:
Q  5 aaatgtttccagttgttttagcttccaatttccaatttttatagtacatgtatactcaagcttgtgaactcacatagaagttagttttgcactaaacatc 104  Q
    |||||||||||| |||||  ||||||||||||| |||||||||||||||||| |||||||||||||||||||| || ||||  ||||| || |||||| |    
T  9604754 aaatgtttccagctgtttcggcttccaatttccgatttttatagtacatgtacactcaagcttgtgaactcacgtacaagtctgttttccattaaacaac 9604655  T
Q  105 atagaatt 112  Q
    | ||||||    
T  9604654 acagaatt 9604647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 2918007 - 2917952
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattccc 204  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2918007 caggggcggattcacactgaaacatggtgtggcagttgccacaccagattattccc 2917952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 51513180 - 51513128
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattatt 201  Q
    |||||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  51513180 caggggcggatccactgtgaaacatggtgtggcagttgccacactagattatt 51513128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 28323073 - 28323128
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattccc 204  Q
    ||||||||||| |||  ||||||||||||||||| |||||||||||||||||||||    
T  28323073 caggggcggattcaccttgaaacatggtgtggcacttgccacaccagattattccc 28323128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 46672908 - 46672856
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattatt 201  Q
    ||||||| |||||||||||||||||| || |||| ||||||||||||||||||    
T  46672908 caggggcagatccacactgaaacatgttgcggcacttgccacaccagattatt 46672856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 4939936 - 4939976
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgcca 189  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  4939936 caggggcggatccactatgaaacatggtgtggcagttgcca 4939976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 29247226 - 29247170
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29247226 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 29247170  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 28535210 - 28535242
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccagatt 198  Q
    |||||||||||||||||| ||||||||||||||    
T  28535210 tgaaacatggtgtggcagctgccacaccagatt 28535242  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 33619691 - 33619647
Alignment:
Q  153 ggcggatccacactgaaacatggtgtggcagttgccacaccagat 197  Q
    |||||||| ||  |||||||||||||||||||||||||| |||||    
T  33619691 ggcggatctactgtgaaacatggtgtggcagttgccacatcagat 33619647  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 46913513 - 46913457
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46913513 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 46913457  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 41969778 - 41969832
Alignment:
Q  150 aggggcggatccacactgaaacatggtgtggcagttgccacaccagattattccc 204  Q
    |||||||||| |||  ||||||||||||||||| |||||||||||||||||||||    
T  41969778 aggggcggattcaccttgaaacatggtgtggcacttgccacaccagattattccc 41969832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 28998020 - 28998068
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagat 197  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  28998020 caggggcggatctactgtgaaacatggtgtggcagttgccacaccagat 28998068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 42897802 - 42897753
Alignment:
Q  152 gggcggatccacactgaaacatggtgtggcagttgccacaccagattatt 201  Q
    |||||||||||   |||||||||||||||||||||||| |||||||||||    
T  42897802 gggcggatccagtttgaaacatggtgtggcagttgccataccagattatt 42897753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 36617092 - 36617052
Alignment:
Q  147 accaggggcggatccacactgaaacatggtgtggcagttgc 187  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  36617092 accaggggcggatccacagtgaaatatggtgtggcagttgc 36617052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 19815109 - 19815164
Alignment:
Q  150 aggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    ||||||||||||||  | |  |||||||||||| ||||||||||||||||||||||    
T  19815109 aggggcggatccaccataaggcatggtgtggcacttgccacaccagattattcccc 19815164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 46358056 - 46358015
Alignment:
Q  152 gggcggatccacactgaaacatggtgtggcagttgccacacc 193  Q
    |||||||||||   ||||||||||||||||||||||||||||    
T  46358056 gggcggatccagtttgaaacatggtgtggcagttgccacacc 46358015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 46458043 - 46457998
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacacca 194  Q
    |||||||||| | ||  |||||||||||||||||||||||||||||    
T  46458043 caggggcggagctactatgaaacatggtgtggcagttgccacacca 46457998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 38663020 - 38663052
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccagatt 198  Q
    |||||||||||||||||| ||||||||||||||    
T  38663020 tgaaacatggtgtggcagctgccacaccagatt 38663052  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 2123908 - 2123852
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2123908 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 2123852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 38740983 - 38741039
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38740983 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 38741039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 33403424 - 33403480
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33403424 caggggcggatctacactgaaacatggtgtggcagttgccacaccagattattcccc 33403480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 50158589 - 50158641
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattatt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50158589 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattatt 50158641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 32940712 - 32940751
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32940712 tgaaacatggtgtggcagttgccacaccagattattcccc 32940751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 37187909 - 37187959
Alignment:
Q  147 accaggggcggatccacactgaaacatggtgtggcagttgccacaccagat 197  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  37187909 accaggggcggatctactgtgaaacatggtgtggcagttgccacaccagat 37187959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 5458862 - 5458825
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccagattattcc 203  Q
    |||||||| |||||||||||||||||||||||||||||    
T  5458862 tgaaacatagtgtggcagttgccacaccagattattcc 5458825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 29702453 - 29702498
Alignment:
Q  156 ggatccacactgaaacatggtgtggcagttgccacaccagattatt 201  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||    
T  29702453 ggatccatattgaaacatggtgtggcacttgccacaccagattatt 29702498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 18431743 - 18431711
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccagatt 198  Q
    |||||||||||||||||| ||||||||||||||    
T  18431743 tgaaacatggtgtggcagctgccacaccagatt 18431711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 498084 - 498029
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattccc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  498084 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattccc 498029  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 50385857 - 50385912
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattccc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50385857 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattccc 50385912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 53446077 - 53446021
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    ||||||||||| |||  ||||||||||||||||| ||||||||||||||||||||||    
T  53446077 caggggcggattcaccttgaaacatggtgtggcacttgccacaccagattattcccc 53446021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 49430679 - 49430633
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccag 195  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||    
T  49430679 caggggcggatccactttgaaacatggtgtggcagttgccacaccag 49430633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 22418553 - 22418601
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagat 197  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  22418553 caggggcggatctactgtgaaacatggtgtggcagttgccacaccagat 22418601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 43055657 - 43055605
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattatt 201  Q
    |||| ||||| ||||  ||||||||||||||||||||||||||||||||||||    
T  43055657 caggagcggacccactgtgaaacatggtgtggcagttgccacaccagattatt 43055605  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 24758640 - 24758601
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  24758640 tgaaacatggtgtggcacttgccacaccagattattcccc 24758601  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 24767637 - 24767598
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  24767637 tgaaacatggtgtggcacttgccacaccagattattcccc 24767598  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 29694358 - 29694309
Alignment:
Q  156 ggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    ||||||||| |||| ||||||||||||  |||||||||| ||||||||||    
T  29694358 ggatccacattgaagcatggtgtggcaagtgccacaccaaattattcccc 29694309  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 2125281 - 2125313
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccagatt 198  Q
    |||||||||||||||||| ||||||||||||||    
T  2125281 tgaaacatggtgtggcagctgccacaccagatt 2125313  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 26555493 - 26555525
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccagatt 198  Q
    |||||||||||||||||| ||||||||||||||    
T  26555493 tgaaacatggtgtggcagctgccacaccagatt 26555525  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 28211774 - 28211742
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccagatt 198  Q
    |||||||||||||||||| ||||||||||||||    
T  28211774 tgaaacatggtgtggcagctgccacaccagatt 28211742  T

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Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 34225676 - 34225730
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34225676 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcc 34225730  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 25981135 - 25981191
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattcccc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25981135 caggggcggatccacactgaaacatggtgtggcagttgccacaccaaattattcccc 25981191  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 3058960 - 3059015
Alignment:
Q  149 caggggcggatccacactgaaacatggtgtggcagttgccacaccagattattccc 204  Q
    |||||||  ||||||||| |||||||||||||||||||||||||||||||||||||    
T  3058960 caggggcaaatccacactaaaacatggtgtggcagttgccacaccagattattccc 3059015  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 14396155 - 14396093
Alignment:
Q  149 caggggcggatccacactgaaacatggtgt------ggcagttgccacaccagattattcccc 205  Q
    |||||||||||||||| |||||||||||||      |||||||||||||||||||||||||||    
T  14396155 caggggcggatccacagtgaaacatggtgtggcaatggcagttgccacaccagattattcccc 14396093  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 18113885 - 18113834
Alignment:
Q  147 accaggggcggatccacactgaaacatggtgtggcagttgccacaccagatt 198  Q
    |||| ||||||||  ||| |||||||||||||||||||||||||||||||||    
T  18113885 accatgggcggatgtacattgaaacatggtgtggcagttgccacaccagatt 18113834  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 424878 - 424832
Alignment:
Q  152 gggcggatccacactgaaacatggtgtggcagttgccacaccagatt 198  Q
    ||||||||  ||| |||||||||||||||||| ||||||||||||||    
T  424878 gggcggatgtacattgaaacatggtgtggcagctgccacaccagatt 424832  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 39421044 - 39421078
Alignment:
Q  171 catggtgtggcagttgccacaccagattattcccc 205  Q
    |||||||||||| ||||||||||||||||||||||    
T  39421044 catggtgtggcaattgccacaccagattattcccc 39421078  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 2197413 - 2197464
Alignment:
Q  153 ggcggatccacactgaaacatggtgtggcagtt---gccacaccagattatt 201  Q
    |||||||||||  ||||||||||||||||||||   ||||||||||||||||    
T  2197413 ggcggatccaccgtgaaacatggtgtggcagttgccgccacaccagattatt 2197464  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 595534 - 595582
Alignment:
Q  156 ggatccacactgaaacatggtgtggcagttgccacaccagattattccc 204  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  595534 ggatccacagtgaaacatggtgtggcagttgccacaccagattattccc 595582  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 841944 - 841995
Alignment:
Q  150 aggggcggatccacactgaaacatggtgtggcagttgccacaccagattatt 201  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||||||||    
T  841944 aggggcggatccaccgtgaaacatggtgtggcagttgcaacaccagattatt 841995  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 13850509 - 13850538
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccag 195  Q
    ||||||||||||||||||||||||||||||    
T  13850509 tgaaacatggtgtggcagttgccacaccag 13850538  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 5014201 - 5014169
Alignment:
Q  166 tgaaacatggtgtggcagttgccacaccagatt 198  Q
    |||||||||||||||||| ||||||||||||||    
T  5014201 tgaaacatggtgtggcagctgccacaccagatt 5014169  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 37622825 - 37622880
Alignment:
Q  146 taccaggggcggatccacactgaaacatggtgtggcagttgccacaccagattatt 201  Q
    ||||| ||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  37622825 taccaagggcggatccacattgaaacatggtgtgacacttgccacaccagattatt 37622880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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