View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1601_low_3 (Length: 364)
Name: NF1601_low_3
Description: NF1601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1601_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 7108780 - 7109135
Alignment:
| Q |
1 |
atgaagcttatcattgagagaaattatcagagaatatgagtttaaaatgacctctatccaattacaaatgttttcattaaaaccaaaagctttcaaaatc |
100 |
Q |
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| T |
7108780 |
atgaagcttatcattgagagaaattatcagacaatatgagtttaaaatgacctctatccaattccaaatgttttcattaaaaccaaaagctttcaaaatc |
7108879 |
T |
|
| Q |
101 |
ttcaaaagaaattttcattccacagtgtcaaaagctttataaatgtctattttaagggcaagattacctccaaaagatctattatggagaagatcggttg |
200 |
Q |
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| T |
7108880 |
ttcaaaagaaattttcattccacagtgtcaaaagctttataaatgtctattttaagggcaagattacctccaaaagatctattatggcgaagatcgggtg |
7108979 |
T |
|
| Q |
201 |
cctctcaagtgaggttgatacactctttgatttgtctttgttgaataaatcctctttgatgattagaaatgaggttaggcatgattctagctaacctttc |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
7108980 |
cctctcaagtgaggttgatgcactctttgatttgtctgtgttgaataaattctctttgctgcttagaaatgaggttaggcatgattctagctaacctttc |
7109079 |
T |
|
| Q |
301 |
agcaatcactttggttataattttaaacttgaagttatctaaagctataggcctat |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7109080 |
agcaatcactttggttataattttaaacttgaagttatctaaagctataggtctat |
7109135 |
T |
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