View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1601_low_4 (Length: 356)
Name: NF1601_low_4
Description: NF1601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1601_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 24260584 - 24260910
Alignment:
| Q |
15 |
tgaaggaactggaatcaaaataggtgcaccaaaccgaggaaaaattagtttttattcataacattgaagtgtcaaatatgcgttgtaatgattttgaata |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24260584 |
tgaaggaactggaatcaaaataggcgcaccaaaccgaggaaaaattagtttttattcataacattgaagtgtcaaatatgcgttgtaatgattttgaata |
24260683 |
T |
|
| Q |
115 |
ttttctgttgttttcgaacttacattagctttaagtattttctattaaaattgtgtagtgacagtgttatcgtagttttagtgtttaaacttctttgttg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| ||| |||||||||||||||| |||||||||| |
|
|
| T |
24260684 |
ttttctgttgttttcgaacttacattagctttaagtattttcttttaaaattgcgtagtgatagtgttgtcgcagttttagtgtttaaatttctttgttg |
24260783 |
T |
|
| Q |
215 |
cagttcagaagtttatcatgaattaatgtccattttatggcatatctattcgacattatatcatgatgtgatacaatgatttctaattttatagttttta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24260784 |
cagttcagaagtttatcatgaattaatgtccattttatggcatatctattcgacattatatcatgatgtgatacaatgatttctaattttatagttttta |
24260883 |
T |
|
| Q |
315 |
ataacatgtctgattaggtcgtacatg |
341 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
24260884 |
ataacatgtctgattaggtcgtacatg |
24260910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University