View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1601_low_5 (Length: 341)
Name: NF1601_low_5
Description: NF1601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1601_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 50325977 - 50325659
Alignment:
| Q |
7 |
tagattattcttatacgcaataattaaagaaaataagttattgaacgtaaacacatgtagcacgtgctacgcgaaatgtagacatactcgcatatgctat |
106 |
Q |
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| T |
50325977 |
tagataattcttatacgcaataattaaagaaaataagttattgaacgtaaacacatgtggcacgtgctacgtgaaatgtggacatactcgcatatgctat |
50325878 |
T |
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| Q |
107 |
acaagttcagcattaataaattattacataaaactataaaatagtccctaattattggaaaattgccaaattcacatattagatagaagcacacgaggtc |
206 |
Q |
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| T |
50325877 |
acaagttcagaattaataaattattacataaaactataaaatagtccctaattattggaaaattgccaaattcacatattatatagaagcacacgaggtc |
50325778 |
T |
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| Q |
207 |
tcttcaagttgagagaatttatgattaccccattggaaggattctttccctgtgttttttacctgatgaaggaaaaaagacaacaattaaaccaaaaaga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50325777 |
tcttcaagttgagagaatttatgattaccccattggaaggattctttccctgtgttttttacctgatgaaggaaaaaagacaacaattaaaccaaaaaga |
50325678 |
T |
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| Q |
307 |
cagaacataacataaaaag |
325 |
Q |
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|||||||||| |||||||| |
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| T |
50325677 |
cagaacataaaataaaaag |
50325659 |
T |
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