View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1601_low_7 (Length: 258)
Name: NF1601_low_7
Description: NF1601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1601_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 36515247 - 36515020
Alignment:
| Q |
18 |
ctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgtt |
117 |
Q |
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| T |
36515247 |
ctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgtt |
36515148 |
T |
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| Q |
118 |
catatcatatcacacaaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515147 |
catatcatatcacacaaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttgt |
36515048 |
T |
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| Q |
218 |
gtccagtgtttgtgtccgtatctgtgct |
245 |
Q |
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| T |
36515047 |
gtccagtgtctgtgtccgtatctgtgct |
36515020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 36805979 - 36806206
Alignment:
| Q |
18 |
ctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36805979 |
ctactttcttccatttagtgttgttatgatccttgaacatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgtt |
36806078 |
T |
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| Q |
118 |
catatcatatcacacaaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttgt |
217 |
Q |
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| T |
36806079 |
catatcatatcacacaaatatgcatattggaatagaagttatggagctgatcatttcatgctttcttgtcatgattgggtactttcttgaccatttctgt |
36806178 |
T |
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| Q |
218 |
gtccagtgtttgtgtccgtatctgtgct |
245 |
Q |
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||| |||| |||||||||||||||||| |
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| T |
36806179 |
gtctggtgtctgtgtccgtatctgtgct |
36806206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 41756718 - 41756757
Alignment:
| Q |
159 |
tggagctgaccatttcatgctttcttgtcatgattgggta |
198 |
Q |
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| T |
41756718 |
tggagctgatcatttcatgctttcttgccatgattgggta |
41756757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 41764634 - 41764699
Alignment:
| Q |
133 |
aaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggta |
198 |
Q |
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| T |
41764634 |
aaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatgattgggta |
41764699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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