View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1601_low_9 (Length: 236)
Name: NF1601_low_9
Description: NF1601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1601_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 4457339 - 4457189
Alignment:
| Q |
1 |
tataaaaaagatctaaagttgaaaattcccaacttgttcctaatgtactccctcatgattgagtcatgagagtcattccaccatctgatattatgattag |
100 |
Q |
| |
|
||||||||| ||||||||||| | || |||||||||||| |||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4457339 |
tataaaaaatatctaaagttggacatacccaacttgttcataatgtactcccccataattgagtcatgagagtcattacaccatctgatattatgattag |
4457240 |
T |
|
| Q |
101 |
aaaaagataaacttaaattagccataccatatgcgcatgaattgccttctc |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4457239 |
aaaaagataaacttaaattagccataccatatgcgcatgaattgccttctc |
4457189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University