View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602-INSERTION-1 (Length: 528)
Name: NF1602-INSERTION-1
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602-INSERTION-1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Original strand, 13923252 - 13923770
Alignment:
| Q |
8 |
attatacatttaaattggatcatgctaacaagtgataatattatatttgtttgattatgtagtattttaaggatttctccaacnnnnnnnnntgtatctt |
107 |
Q |
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| T |
13923252 |
attagacatttaaattggatcatgctaacaagtgataatattatatttgtttgattataaagtattttaaggatttctccaaaaaaaaaa---gtatctt |
13923348 |
T |
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| Q |
108 |
atggannnnnnnnnnnnnctgagaaaggtgttttaaggatattgattcgcatatttatcgaattaaacttcaatttgtattttcgactaaaatttagtga |
207 |
Q |
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| T |
13923349 |
atggattttttatttttactgtgaaaggtatcttaaggatattggttagcatatttatcgaattgaacttcaatttgtattttcgactaaaatttatgga |
13923448 |
T |
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| Q |
208 |
taactatgcatgtgcaagaaactatcaaatttcaaagagtggctacaaagtgcaagcttgatgcaaatttttggatcgttagggctgtacactacacagc |
307 |
Q |
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| T |
13923449 |
taactatgcatgtgcaagaaactatcaaatttcaaagagtggctacaaagtgcaagcttgatgcaaatttttggatcgttggggctgtacactacacagc |
13923548 |
T |
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| Q |
308 |
aattgg-ctatttagattgaaggaaatttcctagctagttgcaactagaagaggttcactaaaaatatgttggggtttttcttccattcattaatgtcta |
406 |
Q |
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| T |
13923549 |
aattgggctatttagattgaaggaaatttcctagctagttgcaactagaagaggttcactaaaaatatgttggggtttttcttccattcattaatgtcta |
13923648 |
T |
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| Q |
407 |
gatcgatcattttcaactacttgaaattaaccaaactaggccaaccaattctagactgatagtagagtatcaagtggatttcatattgtaccaaatttct |
506 |
Q |
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| T |
13923649 |
gatcgatcattttcaactacttgaaattaaccaaactaggccaaccaattctacactgatagtagagtatcaagtggatttcatattgtaccaaatttct |
13923748 |
T |
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| Q |
507 |
tattggaattaatttgtaccag |
528 |
Q |
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| T |
13923749 |
tattggaattaatttgtaccag |
13923770 |
T |
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