View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602-INSERTION-2 (Length: 357)
Name: NF1602-INSERTION-2
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602-INSERTION-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 672797 - 673146
Alignment:
| Q |
8 |
tcctccacaacaagaggaccctaaaactggtgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaacta |
107 |
Q |
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| T |
672797 |
tcctccacaacaagaggaccctaaaactggtgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaacta |
672896 |
T |
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| Q |
108 |
acacaaaccaatgatcaaaaccaaaaactctccatcttggtttatttttatggtggtgcattcagctttgaatcagcatattcatccatccaccatacat |
207 |
Q |
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| T |
672897 |
acacaaaccaatgatcaaaaccaaaaactctccatcttggtttatttttatggtggtgcattcagctttgaatcagcatattcatccatccaccatgcat |
672996 |
T |
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| Q |
208 |
attgtaacctcttagctcctcaagcaaatattttgattgcttccatagaacatagaaatgctccagagcattatcttcctgcaggttataatgattgttg |
307 |
Q |
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| T |
672997 |
attgtaacctcttagcttctcaagcaaatattttgattgcttccatagaacatagaaatgctccagagcattatcttcctgcaggttataatgattgttg |
673096 |
T |
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| Q |
308 |
ggatggtctctattgggttgcttctcatgcaacccaaaatcccataaaca |
357 |
Q |
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| T |
673097 |
ggatggtctctattgggttgcttctcatgcaactcaaaatcccataaaca |
673146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 335
Target Start/End: Original strand, 663056 - 663344
Alignment:
| Q |
38 |
tgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaactaacacaaaccaatgatcaaaaccaaaaactc |
137 |
Q |
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| T |
663056 |
tgtctcatcaaaagacattctcttttccaatgaaccttcactctttgctagactttacctaccaaaactaac---------cgatcaaaaccaaaaaata |
663146 |
T |
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| Q |
138 |
tccatcttggtttatttttatggtggtgcattcagctttgaatcagcatattcatc-catccaccatacatattgtaacctcttagctcctcaagcaaat |
236 |
Q |
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| T |
663147 |
cctatcttagtctactttcatggtggtgcattttgttgtgaatcaacttttgcatcacat-catcacaaatattgtaacattattgcttctcaaggaaat |
663245 |
T |
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| Q |
237 |
attttgattgcttccatagaacatagaaatgctccagagcattatcttcctgcaggttataatgattgttgggatggtctctattgggttgcttctcat |
335 |
Q |
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| T |
663246 |
gttctaattttttctattgaatatagaaaagctccagaacattttcttccaacgcaatataatgattgttgggatggtctcaattgggttgcttctcat |
663344 |
T |
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