View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602-INSERTION-3 (Length: 634)

Name: NF1602-INSERTION-3
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602-INSERTION-3
NF1602-INSERTION-3
[»] chr5 (1 HSPs)
chr5 (7-634)||(36925433-36926061)


Alignment Details
Target: chr5 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 7 - 634
Target Start/End: Complemental strand, 36926061 - 36925433
Alignment:
Q  7 atgtggaatctgaatattgggccatagagttgagtttcatttgttacatttgagttttgaccgtattttcttcactaatgccaactgcttgattaccatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36926061 atgtggaatctgaatattgggccatagagttgagtttcatttgttacatttgagttttgaccgtattttcttcactaatgcaaactgcttgattaccatt 36925962  T
Q  107 ggtacatgcacaagagttttgatcttcttgattttttgcaacggcaatgcatatcaacagaactgtttacatgcattgatataaacaaattataaaatca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36925961 ggtacatgcacaagagttttgatcttcttgattttttgcaacggcaatgcatatcaacagaactgtttacatgcattgatataaacaaattataaaatca 36925862  T
Q  207 taataaaatatgacagcttagaattactaaattttaattttgtttcaatcaatagcataaattcctaccttatcttataaactgtatctattacatttag 306  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  36925861 taataaaatatgaaagcttagaattactaaattttaattttgtttcaatcaatagcataaattcctatcttatcttataaagtgtatctattacatttag 36925762  T
Q  307 gatatttaatatctttatttagtgaattcatttagccaccaaaacttaataaatttggccatttaaaaggcaataaatacgaaaaatcctcaagaagaat 406  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  36925761 gatatttaatatctttatttagtgaattcatttagcctccaaaacttaataaatttggccatttaaaatgcaataaatacgaaaaatcctcaagaaggat 36925662  T
Q  407 ttcttgcaataatgtggttgtactgaaactgactacgtagagcagaccatttataatcgacctcaaatatttgttgccgagctttcatttgatcttccac 506  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36925661 ttcttgcaataatgtggttgtattgaaactgactacgtagagcagaccatttataatcgacctcaaatatttgttgccgagctttcatttgatcttccac 36925562  T
Q  507 aatttgatttttgtctttcctcaaattctccagctccgttttgtagcctatagtttcttgaatgcatttatccttctcctcttgaagatgtattatttct 606  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36925561 aatttgatttttgtctttcctcaaattctccagctcagttttgtagcctatagtttcttgaatgcatttatccttctcctcttgaagatgtattatttct 36925462  T
Q  607 ttctcc-attgaatgatctgttcctttaa 634  Q
    |||||| ||||||||||||||||||||||    
T  36925461 ttctccaattgaatgatctgttcctttaa 36925433  T

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