View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602-INSERTION-4 (Length: 409)
Name: NF1602-INSERTION-4
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602-INSERTION-4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 409
Target Start/End: Complemental strand, 3137011 - 3136609
Alignment:
| Q |
7 |
agaaggggaaacccttgaaggagatatttctctcctattttcttataaaagtattatttctgttccattcaatttcttggttcctaatgttgacagtcta |
106 |
Q |
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| T |
3137011 |
agaaggggaaacccttgaaggagatatttctctcctatttccttataaaagtattatttctgttccattcaatttcttggttcctaatgttgacagtcta |
3136912 |
T |
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| Q |
107 |
atcttgcattagcaagatggtaattctatgatctgaacccttggcatttaatgtttggaggtataaaataactgtttaaaatttgcaatgttaaatgaca |
206 |
Q |
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| T |
3136911 |
atcttgcattagcaagatggtaattctatgatctgaacccttggcatttaatgattggaggtataaaataactgtttaaaatttgcaatgttaaatgaca |
3136812 |
T |
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| Q |
207 |
tttggggattttcatacaacaggagtttacctttgagccaatttttagtttctgctttggattaattccttattcatttggaatcacaccatcagcaaga |
306 |
Q |
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| T |
3136811 |
tttggggattttcatacaacaggagtttacctttgagccaatttttagtttctgctttggattaattccatattcatttggaatcacaccatcagcaaga |
3136712 |
T |
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| Q |
307 |
gcctgcaaataaattggtagagtaatcaggaaaacaagaacagagctgagctcagcagccatagttgataaatatacagaggaaagcagtcatcaccaac |
406 |
Q |
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| T |
3136711 |
gcctgcaaataaattggtagagtaatcaggaaaacaagaacagagctgaactcagcagccatagttgataaatatacagaggaaagcagtcatcaccaac |
3136612 |
T |
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| Q |
407 |
aag |
409 |
Q |
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| T |
3136611 |
aag |
3136609 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 1930042 - 1929963
Alignment:
| Q |
233 |
ttacctttgagccaatttttagtttctgctttggattaattccttattcatttggaatcacaccatcagcaagagcctgc |
312 |
Q |
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| T |
1930042 |
ttacctttgagccaatcttcagcttctgactgggattaattccgtattcatttggtattacaccatcagcaagtgcctgc |
1929963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 13728636 - 13728670
Alignment:
| Q |
11 |
ggggaaacccttgaaggagatatttctctcctatt |
45 |
Q |
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| T |
13728636 |
ggggaaacccttggaggagatatttctctcctatt |
13728670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 15047155 - 15047192
Alignment:
| Q |
8 |
gaaggggaaacccttgaaggagatatttctctcctatt |
45 |
Q |
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| T |
15047155 |
gaaggggaaacccttggaggagagatttctctcctatt |
15047192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 16502589 - 16502626
Alignment:
| Q |
8 |
gaaggggaaacccttgaaggagatatttctctcctatt |
45 |
Q |
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| T |
16502589 |
gaaggggaaacccttggaggagagatttctctcctatt |
16502626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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