View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602-INSERTION-5 (Length: 225)

Name: NF1602-INSERTION-5
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602-INSERTION-5
NF1602-INSERTION-5
[»] chr4 (6 HSPs)
chr4 (26-68)||(23387723-23387765)
chr4 (8-68)||(13061064-13061124)
chr4 (8-68)||(37262999-37263059)
chr4 (8-68)||(12875937-12875997)
chr4 (36-68)||(24491371-24491403)
chr4 (8-68)||(33467497-33467557)
[»] chr8 (4 HSPs)
chr8 (8-68)||(4241441-4241501)
chr8 (36-67)||(19431316-19431347)
chr8 (36-67)||(19567465-19567496)
chr8 (8-67)||(19951056-19951115)
[»] chr5 (7 HSPs)
chr5 (8-68)||(558369-558429)
chr5 (8-68)||(26668877-26668937)
chr5 (8-68)||(26940474-26940534)
chr5 (8-68)||(39519985-39520045)
chr5 (8-68)||(41998315-41998375)
chr5 (26-68)||(36940625-36940667)
chr5 (26-65)||(36425255-36425294)
[»] chr3 (5 HSPs)
chr3 (8-68)||(3674239-3674299)
chr3 (8-68)||(23664557-23664617)
chr3 (8-68)||(8884843-8884903)
chr3 (8-68)||(18468812-18468872)
chr3 (8-68)||(12970245-12970305)
[»] chr2 (5 HSPs)
chr2 (8-68)||(17973786-17973846)
chr2 (8-68)||(25483205-25483265)
chr2 (8-68)||(25490811-25490871)
chr2 (8-68)||(30652514-30652574)
chr2 (8-68)||(9183853-9183913)
[»] chr1 (2 HSPs)
chr1 (8-68)||(10136925-10136985)
chr1 (8-68)||(25845356-25845416)
[»] chr6 (3 HSPs)
chr6 (8-67)||(16834598-16834657)
chr6 (8-68)||(12797206-12797266)
chr6 (30-67)||(19479413-19479450)
[»] scaffold0690 (1 HSPs)
scaffold0690 (9-68)||(6781-6840)
[»] scaffold0011 (1 HSPs)
scaffold0011 (36-67)||(2908-2939)
[»] chr7 (4 HSPs)
chr7 (27-68)||(10391530-10391571)
chr7 (36-68)||(7018015-7018047)
chr7 (36-68)||(7033373-7033405)
chr7 (8-68)||(12802881-12802941)


Alignment Details
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 23387765 - 23387723
Alignment:
Q  26 tattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  23387765 tattttttgagatctccaatcatttaggtcgggttaccatcac 23387723  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 13061064 - 13061124
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    |||||||||||||  || ||||| ||| |||||||| ||||||||||||||||||||||||    
T  13061064 gttattacccatcgaacctatttcttgggatctccagtcatgtaggtcgggttaccatcac 13061124  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 37263059 - 37262999
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  37263059 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 37262999  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 12875937 - 12875997
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||| |||||||||| |||||||||||||    
T  12875937 gttattacccattgaacctatttcttgggatctccagtcatgtaggttgggttaccatcac 12875997  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 24491371 - 24491403
Alignment:
Q  36 gatctccaatcatgtaggtcgggttaccatcac 68  Q
    |||||||| ||||||||||||||||||||||||    
T  24491371 gatctccagtcatgtaggtcgggttaccatcac 24491403  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 33467557 - 33467497
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||| ||||||||||||||||||| ||||    
T  33467557 gttattacccattgaacctatttcttgggatctccagtcatgtaggtcgggttaccttcac 33467497  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 4241501 - 4241441
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  4241501 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 4241441  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 67
Target Start/End: Original strand, 19431316 - 19431347
Alignment:
Q  36 gatctccaatcatgtaggtcgggttaccatca 67  Q
    ||||||||||||||||||||||||||||||||    
T  19431316 gatctccaatcatgtaggtcgggttaccatca 19431347  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 67
Target Start/End: Original strand, 19567465 - 19567496
Alignment:
Q  36 gatctccaatcatgtaggtcgggttaccatca 67  Q
    ||||||||||||||||||||||||||||||||    
T  19567465 gatctccaatcatgtaggtcgggttaccatca 19567496  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 19951056 - 19951115
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatca 67  Q
    ||||||||||||   || ||||| ||| ||||||||||||| ||||||||||||||||||    
T  19951056 gttattacccattgaacctatttcttgggatctccaatcatttaggtcgggttaccatca 19951115  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 558369 - 558429
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  558369 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 558429  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 26668877 - 26668937
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  26668877 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 26668937  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 26940474 - 26940534
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  26940474 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 26940534  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 39519985 - 39520045
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  39519985 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 39520045  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 41998315 - 41998375
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  41998315 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 41998375  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 36940667 - 36940625
Alignment:
Q  26 tattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  36940667 tatttcttgggatctccaatcatgtaggtcgggttaccatcac 36940625  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 36425255 - 36425294
Alignment:
Q  26 tattttttgagatctccaatcatgtaggtcgggttaccat 65  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  36425255 tatttcttgggatctccaatcatgtaggtcgggttaccat 36425294  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 3674239 - 3674299
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  3674239 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 3674299  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 23664617 - 23664557
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  23664617 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 23664557  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 8884843 - 8884903
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||| ||||||||||||||||||||||||||    
T  8884843 gttattacccattgaacctatttcttgggatctctaatcatgtaggtcgggttaccatcac 8884903  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 18468812 - 18468872
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||| ||||||||||||    
T  18468812 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcaggttaccatcac 18468872  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 12970305 - 12970245
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| ||||||||||||| |||||| ||||||||||||    
T  12970305 gttattacccattgaacctatttcttgggatctccaatcatataggtcaggttaccatcac 12970245  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 17973846 - 17973786
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  17973846 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 17973786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 25483265 - 25483205
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  25483265 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 25483205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 25490871 - 25490811
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  25490871 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 25490811  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 30652514 - 30652574
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  30652514 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 30652574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 9183913 - 9183853
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| ||||||||||||||||||||||||||| |||||    
T  9183913 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttactatcac 9183853  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 10136925 - 10136985
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  10136925 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 10136985  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 25845356 - 25845416
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||||||||||||||||    
T  25845356 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatcac 25845416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 16834657 - 16834598
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatca 67  Q
    ||||||||||||   || ||||| ||| ||||||||||||||||||||||||||||||||    
T  16834657 gttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttaccatca 16834598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 12797266 - 12797206
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   | ||| |||||| |||||||| ||||||||||||||||||||||||    
T  12797266 gttattacccattgaatatactttttgggatctccagtcatgtaggtcgggttaccatcac 12797206  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 19479413 - 19479450
Alignment:
Q  30 ttttgagatctccaatcatgtaggtcgggttaccatca 67  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  19479413 ttttgggatctcgaatcatgtaggtcgggttaccatca 19479450  T

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Target: scaffold0690 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 6781 - 6840
Alignment:
Q  9 ttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    |||||||||||   || ||||| ||| |||||||| ||||||||||||||||||||||||    
T  6781 ttattacccattgaacttatttcttgggatctccagtcatgtaggtcgggttaccatcac 6840  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 67
Target Start/End: Original strand, 2908 - 2939
Alignment:
Q  36 gatctccaatcatgtaggtcgggttaccatca 67  Q
    ||||||||||||||||||||||||||||||||    
T  2908 gatctccaatcatgtaggtcgggttaccatca 2939  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 10391571 - 10391530
Alignment:
Q  27 attttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    |||||||| |||||||| ||| ||||||||||||||||||||    
T  10391571 attttttgggatctccagtcacgtaggtcgggttaccatcac 10391530  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 7018047 - 7018015
Alignment:
Q  36 gatctccaatcatgtaggtcgggttaccatcac 68  Q
    |||||||| ||||||||||||||||||||||||    
T  7018047 gatctccattcatgtaggtcgggttaccatcac 7018015  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 7033405 - 7033373
Alignment:
Q  36 gatctccaatcatgtaggtcgggttaccatcac 68  Q
    |||||||| ||||||||||||||||||||||||    
T  7033405 gatctccattcatgtaggtcgggttaccatcac 7033373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 12802881 - 12802941
Alignment:
Q  8 gttattacccatcacacatattttttgagatctccaatcatgtaggtcgggttaccatcac 68  Q
    ||||||||||||   || ||||| ||| |||||||||||||||||||  ||||||||||||    
T  12802881 gttattacccattgaacctatttcttgggatctccaatcatgtaggttaggttaccatcac 12802941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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