View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602-INSERTION-6 (Length: 492)
Name: NF1602-INSERTION-6
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602-INSERTION-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 21 - 492
Target Start/End: Original strand, 3809650 - 3810121
Alignment:
| Q |
21 |
atataattgatctctgtcatatggcttataatatttgatatttgcagccatcgacggttgtgttcaaagacatggttaatgaattgcgaaatgggagaga |
120 |
Q |
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| T |
3809650 |
atataattgatctctgtcatatggcttataatatttgatatttgcagccatcaacggttgtgttcaaagacatggttaatgaattgcgaaatgggagaga |
3809749 |
T |
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| Q |
121 |
aaatccagatggtgcagaccaaggttttatagatagctacttccctgacttgcttgataagccattgtttcatccgccttcaaatgacaccaagcttgag |
220 |
Q |
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| T |
3809750 |
aaatccagatggtgcagaccaaggttttatagatagctacttccctgacttgcttgataagccattgtttcatccgccttcaaatgacaccaagcttgag |
3809849 |
T |
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| Q |
221 |
ggaacatataggcttcctttaggttatcagatggatgcttcttactactgtatgtaaattaaaatagagttctttaaacattgtaatatgcactaatgca |
320 |
Q |
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| T |
3809850 |
ggaacatataggcttcctttaggttatcagatggatgcttcttactactgtaagtaaattaaaatagagttctttaaacattttaatatgcactaatgca |
3809949 |
T |
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| Q |
321 |
gtcgctcattggaatctaagtaatttgtgctaatatctccccttcttgatttcagatcttaaacttcgttggagcataccatgtggaccaaatagtgtga |
420 |
Q |
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| T |
3809950 |
gtcgctcattggaatctaagtaatttgtgctaatatctccccttcttgatttcagatcttaaacttcgttggagcataccatgtggaccaaatagtgtga |
3810049 |
T |
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| Q |
421 |
tcacattccc-ggggcaccatggttgaagccatggtattggtggtccttggcctgtcctgccactaggcatcc |
492 |
Q |
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| T |
3810050 |
tcacattcccgggggcaccatggttgaagccatggtattggtggt-cttggcctgtcctgccactaggcatcc |
3810121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 56 - 272
Target Start/End: Complemental strand, 41674017 - 41673801
Alignment:
| Q |
56 |
tgatatttgcagccatcgacggttgtgttcaaagacatggttaatgaattgcgaaatgggagagaaaatccagatggtgcagaccaaggttttatagata |
155 |
Q |
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| T |
41674017 |
tgatacttgcagccgtcaatggtggtgttcaaggacatggttcatgaattacagaatgggagagaaaatccagatggtgcagaccagggtttcatagcta |
41673918 |
T |
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| Q |
156 |
gctacttccctgacttgcttgataagccattgtttcatccgccttcaaatgacaccaagcttgagggaacatataggcttcctttaggttatcagatgga |
255 |
Q |
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| T |
41673917 |
gctacttcccagatttgcttgataaaacattgtttcatccacctccaaatggcaccaaacttgatggaacatatagacttcctttaggctatcaaatgga |
41673818 |
T |
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| Q |
256 |
tgcttcttactactgta |
272 |
Q |
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| T |
41673817 |
tgcttcgtactactgta |
41673801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 373 - 488
Target Start/End: Complemental strand, 41673694 - 41673579
Alignment:
| Q |
373 |
cagatcttaaacttcgttggagcataccatgtggaccaaatagtgtgatcacattccc-ggggcaccatggttgaagccatggtattggtggtccttggc |
471 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| | |||| |
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| T |
41673694 |
cagatcttaaacttcgctggagcataccatgcggaccaaatagtgtgattacgttcccgggggcaccatggttgaagccatggtattggtgg-gcgtggc |
41673596 |
T |
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| Q |
472 |
ctgtcctgccactaggc |
488 |
Q |
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| T |
41673595 |
ctgtcctgccattaggc |
41673579 |
T |
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