View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_106 (Length: 253)
Name: NF16020_high_106
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_106 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38931704 - 38931946
Alignment:
| Q |
1 |
cactccatgtttcaggatctctttgaatggcccatgcattaatcaaaactatcgtgtcacgtggaatagtaaatccttcaatattgcactcgtttgaaga |
100 |
Q |
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| T |
38931704 |
cactccatgtttcaggatctctttgaatggcccatgcattaatcaaaactatcgtgtcacgtggaatagtaaatccttcaatattgcactcgtttgaaga |
38931803 |
T |
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| Q |
101 |
aaaacgaggcaataataatggagctggagagtacaaccgaagtgtctcgtagataatgttttgaatgtaaggaagatttggaatgtctgactcttctacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38931804 |
aaaacgaggcaataataatggagctggagagtacaaccgaagtgtctcgtagataatgttttgaatgtaagaaagatttggaatgtctgactcttctacc |
38931903 |
T |
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| Q |
201 |
aaacgatcataccctatttgagtgttcagttcatcctttgctt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931904 |
aaacgatcataccctatttgagtgttcagttcatcctttgctt |
38931946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 12151598 - 12151823
Alignment:
| Q |
18 |
tctctttgaatggcccatgcattaatcaaaactatcgtgtcacgtggaatagtaaatccttcaatattgcactcgtttgaagaaaaacgaggcaataata |
117 |
Q |
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| T |
12151598 |
tctctttgaatggcccatgcattaatcaaaactatagtgtcacgtggaatagtataaccttcgatattacattcatccgaagaaaaacgaggtaatagta |
12151697 |
T |
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| Q |
118 |
atggagctggagagtacaaccgaagtgtctcgtagataatgttttgaatgtaaggaagatttggaatgtctgactcttctaccaaacgatcataccctat |
217 |
Q |
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| T |
12151698 |
atggagcaggagagtataatcttagtgtctcgtagataatgttttgaatgtatggaagatttgaaatgtctgactcatctaccaaacgatcattgcctat |
12151797 |
T |
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| Q |
218 |
ttgagtgttcagttcatcctttgctt |
243 |
Q |
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|| |||| | |||||||||||||| |
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| T |
12151798 |
tttggtgtataattcatcctttgctt |
12151823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 38955843 - 38955786
Alignment:
| Q |
1 |
cactccatgtttcaggatctctttgaatggcccatgcattaatcaaaactatcgtgtc |
58 |
Q |
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|||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||| |
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| T |
38955843 |
cactccatgtttcagggtctctatgaatggcccaagcattgatcaatactatggtgtc |
38955786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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