View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_109 (Length: 249)
Name: NF16020_high_109
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_109 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 30950988 - 30950769
Alignment:
| Q |
21 |
caaaacatggtgtttgcctccactttgatcaacgattttcgtagccatttcaatgataggtccaaaggatgtagtgtctgat-ttaaaaacataagtatg |
119 |
Q |
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| T |
30950988 |
caaaacatggtgtttgcctccactctgatcaacgattttcgtagccatttcaatgataggtgcaaaggatgtagtgcctgatgttaaaaacataagtatg |
30950889 |
T |
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| Q |
120 |
attaggtcactctctataacatgaattccaaaaattataataatcaacaaaaacatataatataacctgcaggttgaatattaggacgaatttccctata |
219 |
Q |
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| T |
30950888 |
attaggtcactctctataacatgaattccaaaaattataataatcaacaacaacatataatataacctgcaggttgaatattaggacgaatttccctata |
30950789 |
T |
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| Q |
220 |
ccgactcaaaatttcttcat |
239 |
Q |
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|||||||||||||||||||| |
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| T |
30950788 |
ccgactcaaaatttcttcat |
30950769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 30958526 - 30958473
Alignment:
| Q |
185 |
cctgcaggttgaatattaggacgaatttccctataccgactcaaaatttcttca |
238 |
Q |
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| T |
30958526 |
cctgcaagtcgaatattaggaacaatttccctataccgactcaaaacttcttca |
30958473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 7473361 - 7473307
Alignment:
| Q |
184 |
acctgcaggttgaatattaggacgaatttccctataccgactcaaaatttcttca |
238 |
Q |
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| T |
7473361 |
acctgcaagtttaatattaggaacaatttccctataccgactcaaaacttcttca |
7473307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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