View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16020_high_11 (Length: 575)

Name: NF16020_high_11
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16020_high_11
NF16020_high_11
[»] scaffold0140 (2 HSPs)
scaffold0140 (184-417)||(35474-35711)
scaffold0140 (20-103)||(35793-35877)
[»] chr1 (10 HSPs)
chr1 (192-409)||(52947347-52947565)
chr1 (246-410)||(46652676-46652841)
chr1 (243-296)||(46651475-46651528)
chr1 (367-411)||(28251929-28251973)
chr1 (367-412)||(8323456-8323501)
chr1 (379-412)||(10771350-10771383)
chr1 (351-403)||(46651367-46651420)
chr1 (379-411)||(22506139-22506171)
chr1 (368-412)||(31809986-31810030)
chr1 (367-411)||(31815787-31815831)
[»] chr7 (19 HSPs)
chr7 (410-557)||(40659798-40659946)
chr7 (246-311)||(28848653-28848718)
chr7 (357-418)||(28849975-28850036)
chr7 (246-410)||(43546625-43546790)
chr7 (357-412)||(25008089-25008144)
chr7 (357-410)||(28848557-28848610)
chr7 (368-417)||(41591507-41591556)
chr7 (357-410)||(43545341-43545394)
chr7 (243-296)||(43545456-43545509)
chr7 (379-411)||(23966313-23966345)
chr7 (357-412)||(25009492-25009547)
chr7 (379-410)||(26776309-26776340)
chr7 (379-409)||(4706634-4706664)
chr7 (379-409)||(4707497-4707527)
chr7 (247-296)||(25009381-25009430)
chr7 (379-412)||(44372642-44372675)
chr7 (379-412)||(44381498-44381531)
chr7 (379-419)||(8230060-8230100)
chr7 (243-287)||(28849870-28849914)
[»] chr3 (11 HSPs)
chr3 (246-418)||(45981398-45981571)
chr3 (243-412)||(8392695-8392865)
chr3 (356-412)||(8391398-8391454)
chr3 (379-412)||(25166775-25166808)
chr3 (368-416)||(53529552-53529600)
chr3 (377-412)||(52935683-52935718)
chr3 (379-409)||(20289619-20289649)
chr3 (379-409)||(25165899-25165929)
chr3 (379-411)||(3990115-3990147)
chr3 (379-411)||(39451968-39452000)
chr3 (379-415)||(47721940-47721976)
[»] chr4 (15 HSPs)
chr4 (246-411)||(39929249-39929415)
chr4 (357-416)||(39927926-39927985)
chr4 (11-80)||(13508121-13508190)
chr4 (379-412)||(15807653-15807686)
chr4 (243-300)||(39928043-39928100)
chr4 (367-414)||(4933348-4933395)
chr4 (379-418)||(44251596-44251635)
chr4 (379-410)||(52477644-52477675)
chr4 (367-417)||(4906121-4906171)
chr4 (367-413)||(29756268-29756314)
chr4 (379-409)||(47864489-47864519)
chr4 (379-411)||(4900255-4900287)
chr4 (382-410)||(47848240-47848268)
chr4 (379-407)||(52502407-52502435)
chr4 (379-411)||(52503534-52503566)
[»] scaffold0018 (1 HSPs)
scaffold0018 (246-409)||(193591-193755)
[»] chr5 (7 HSPs)
chr5 (246-409)||(42775420-42775584)
chr5 (357-412)||(42776825-42776880)
chr5 (379-412)||(35988852-35988885)
chr5 (379-414)||(4285760-4285795)
chr5 (379-410)||(30381603-30381634)
chr5 (379-425)||(15795752-15795798)
chr5 (379-411)||(23911911-23911943)
[»] chr2 (15 HSPs)
chr2 (246-409)||(20587039-20587203)
chr2 (243-409)||(20588351-20588518)
chr2 (379-416)||(2238851-2238888)
chr2 (368-416)||(43516391-43516439)
chr2 (379-411)||(21716438-21716470)
chr2 (379-411)||(21720227-21720259)
chr2 (379-414)||(3149914-3149949)
chr2 (379-410)||(28917134-28917165)
chr2 (379-409)||(2237982-2238012)
chr2 (379-417)||(24558832-24558870)
chr2 (379-409)||(24559581-24559611)
chr2 (379-409)||(28916285-28916315)
chr2 (379-408)||(29090891-29090920)
chr2 (367-411)||(22054332-22054376)
chr2 (368-412)||(44820948-44820992)
[»] scaffold0472 (2 HSPs)
scaffold0472 (242-311)||(10337-10406)
scaffold0472 (243-311)||(9119-9187)
[»] scaffold0524 (3 HSPs)
scaffold0524 (185-311)||(8903-9029)
scaffold0524 (357-406)||(7701-7750)
scaffold0524 (351-410)||(9069-9129)
[»] chr8 (12 HSPs)
chr8 (247-311)||(35506824-35506888)
chr8 (379-411)||(23154338-23154370)
chr8 (379-417)||(9898956-9898994)
chr8 (379-409)||(11761038-11761068)
chr8 (368-418)||(21142470-21142520)
chr8 (379-409)||(23153548-23153578)
chr8 (379-409)||(26635510-26635540)
chr8 (368-413)||(359332-359377)
chr8 (242-287)||(35750759-35750804)
chr8 (379-411)||(17132769-17132801)
chr8 (243-311)||(35505621-35505689)
chr8 (379-407)||(37586724-37586752)
[»] scaffold0369 (1 HSPs)
scaffold0369 (357-411)||(8277-8331)
[»] chr6 (10 HSPs)
chr6 (379-421)||(24052024-24052066)
chr6 (379-412)||(6159751-6159784)
chr6 (379-418)||(9698440-9698479)
chr6 (379-410)||(24051254-24051285)
chr6 (379-410)||(28302193-28302224)
chr6 (379-410)||(28509849-28509880)
chr6 (367-417)||(843538-843588)
chr6 (379-409)||(29979254-29979284)
chr6 (367-415)||(19596337-19596385)
chr6 (379-415)||(21634386-21634422)
[»] scaffold0141 (1 HSPs)
scaffold0141 (379-410)||(10305-10336)
[»] scaffold0765 (1 HSPs)
scaffold0765 (379-409)||(386-416)


Alignment Details
Target: scaffold0140 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 184 - 417
Target Start/End: Complemental strand, 35711 - 35474
Alignment:
Q  184 atctagccactccccaactcttttgacacgtaacactccttttgccaggtcacagtaagccacgtgtgtctccgtctgccacctagccgtttttgtaacg 283  Q
    ||||||||||| |||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  35711 atctagccactacccagctcttttgacacgtaaccctccttttgccaagtcaccgtaagccacgtgtgtctccgtctgccacctcgccgtttttgtaacg 35612  T
Q  284 ggagttaacgggaaggaccatttgcaaaacgaaaaaag-cttacaaggagagttttgaaac--nnnnnnngataca-ggacgaattgcaaaaatgcgcga 379  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||          ||||| |||||||||||||||||||||||    
T  35611 ggagttaacgggaatgaccatttgcaaaacgaaaaaagacttacaaggagagttttgaaacaaaaaaaagaatacagggacgaattgcaaaaatgcgcga 35512  T
Q  380 aattacagggacggtttgcatatttaagcctttatttt 417  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  35511 aattacagggacggtttgcatatttaagcctttttttt 35474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 35877 - 35793
Alignment:
Q  20 aaaatttggca-gaaagatgaagaaggtagtaggtgagagatgcagaacaaataaacagagggaagaagaagatgaaaactacag 103  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  35877 aaaatttggcaagaaagatgaagaaggtagtgggtgagagatgctgaacaaataaacagaaggatgaagaagatgaaaactacag 35793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 192 - 409
Target Start/End: Complemental strand, 52947565 - 52947347
Alignment:
Q  192 actccccaactcttttgacacgtaacactccttttgccaggtcacagtaagccacgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaa 291  Q
    |||| ||||||||||||||||||||| ||||||||| || |||||| |||||||||| |||||||| ||||||||| |||||||||||||||||||||||    
T  52947565 actcaccaactcttttgacacgtaaccctccttttgtcaagtcacactaagccacgtatgtctccgcctgccacctcgccgtttttgtaacgggagttaa 52947466  T
Q  292 cgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacnnnnnnngataca-ggacgaattgcaaaaatgcgcgaaattacaggga 390  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||| ||||||||| ||    
T  52947465 cgggaagaatcatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaaaaaaagatacatggacgaattgcaaaaatgcgcaaaattacagaga 52947366  T
Q  391 cggtttgcatatttaagcc 409  Q
    |||||||||||||||||||    
T  52947365 cggtttgcatatttaagcc 52947347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 246 - 410
Target Start/End: Original strand, 46652676 - 46652841
Alignment:
Q  246 cgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacnn 345  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||| |||| | |||||||  |  |  | ||||||||||   |||||||||      
T  46652676 cgtgtgtctccgtctgccaccataacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 46652775  T
Q  346 nnnnngataca-ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcct 410  Q
         |||||| |||||| |||||||||  |||||||||||||||||| ||| |||||||||||||    
T  46652776 aaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcct 46652841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 46651528 - 46651475
Alignment:
Q  243 ccacgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacggga 296  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  46651528 ccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacggga 46651475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 28251973 - 28251929
Alignment:
Q  367 caaaaatgcgcgaaattacagggacggtttgcatatttaagcctt 411  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||    
T  28251973 caaaaatgcgctaaattacagggaccttttgcatatttaagcctt 28251929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 412
Target Start/End: Original strand, 8323456 - 8323501
Alignment:
Q  367 caaaaatgcgcgaaattacagggacggtttgcatatttaagccttt 412  Q
    |||||||||||||| ||||||||||  ||| |||||||||||||||    
T  8323456 caaaaatgcgcgaacttacagggaccttttacatatttaagccttt 8323501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Complemental strand, 10771383 - 10771350
Alignment:
Q  379 aaattacagggacggtttgcatatttaagccttt 412  Q
    ||||||||||||||||||||||||||||| ||||    
T  10771383 aaattacagggacggtttgcatatttaagtcttt 10771350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 46651420 - 46651367
Alignment:
Q  351 gatacagg-acgaattgcaaaaatgcgcgaaattacagggacggtttgcatatt 403  Q
    |||||||| |||| |||||||||  |||||||||||||||||| ||||||||||    
T  46651420 gatacagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatatt 46651367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 22506171 - 22506139
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctt 411  Q
    ||||||||||||||| |||||||||||||||||    
T  22506171 aaattacagggacggattgcatatttaagcctt 22506139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 31810030 - 31809986
Alignment:
Q  368 aaaaatgcgcgaaattacagggacggtttgcatatttaagccttt 412  Q
    ||||||||||||| ||||||||||  ||| |||||||||||||||    
T  31810030 aaaaatgcgcgaacttacagggaccttttacatatttaagccttt 31809986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 31815787 - 31815831
Alignment:
Q  367 caaaaatgcgcgaaattacagggacggtttgcatatttaagcctt 411  Q
    |||||||||||||| ||||||||||  ||| ||||||||||||||    
T  31815787 caaaaatgcgcgaacttacagggaccttttacatatttaagcctt 31815831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 410 - 557
Target Start/End: Original strand, 40659798 - 40659946
Alignment:
Q  410 tttattttaaaacaataatcgcgaaattttgaaagggtaaaataggaaatctggtgaccctcctaataa-ccccaaatcaagtaatcgcaaaacctaaaa 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40659798 tttattttaaaacaataatcgcgaaattttgaaagggtaaaataggaaatctggtgaccctcctaataacccccaaatcaagtaatcgcaaaacctaaaa 40659897  T
Q  509 agaaatctgtgattgctgcttctcccgctcatcccaagtttgatctcag 557  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  40659898 agaaatctgtgattgctgcttctccggctcgtcccaagtttgatctcag 40659946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 28848718 - 28848653
Alignment:
Q  246 cgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaa 311  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||| |||| | |||||||    
T  28848718 cgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaa 28848653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 28849975 - 28850036
Alignment:
Q  357 ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcctttatttta 418  Q
    |||||| |||||||||  |||||| ||||||||||| |||||||||| ||||||||||||||    
T  28849975 ggacgatttgcaaaaacacgcgaagttacagggacgttttgcatattaaagcctttatttta 28850036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 410
Target Start/End: Original strand, 43546625 - 43546790
Alignment:
Q  246 cgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacnn 345  Q
    |||||||||||||||||||||     ||||||||||||||||||||||||| |||| | |||||||  |  |  | ||||||||||   |||| ||||      
T  43546625 cgtgtgtctccgtctgccaccacaatgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttaaaacaa 43546724  T
Q  346 nnnnngataca-ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcct 410  Q
          ||||| |||||| |||||||||  |||||||||||||||||| ||| |||||||||||||    
T  43546725 aaaaaaatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcct 43546790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 25008144 - 25008089
Alignment:
Q  357 ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagccttt 412  Q
    |||||| |||||||||  |||||||||||||||||| ||| |||||||||||||||    
T  25008144 ggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagccttt 25008089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 28848610 - 28848557
Alignment:
Q  357 ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcct 410  Q
    |||||| |||||||||  |||||||||||||||||| ||| |||||||||||||    
T  28848610 ggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcct 28848557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 41591556 - 41591507
Alignment:
Q  368 aaaaatgcgcgaaattacagggacggtttgcatatttaagcctttatttt 417  Q
    ||||||||||||||||||||||||  ||| |||||||||||||| |||||    
T  41591556 aaaaatgcgcgaaattacagggaccttttacatatttaagccttaatttt 41591507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 43545394 - 43545341
Alignment:
Q  357 ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcct 410  Q
    |||||| |||||||||  |||||||||||||||||| |||||||||| ||||||    
T  43545394 ggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattaaagcct 43545341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 43545509 - 43545456
Alignment:
Q  243 ccacgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacggga 296  Q
    |||| |||||||||||||||||||    ||||||||||||||||||||||||||    
T  43545509 ccacatgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacggga 43545456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 23966345 - 23966313
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctt 411  Q
    |||||||||||||||||||||||||||||||||    
T  23966345 aaattacagggacggtttgcatatttaagcctt 23966313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 25009492 - 25009547
Alignment:
Q  357 ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagccttt 412  Q
    |||||| |||||||||  |||||||||||||||||| ||| |||||| ||||||||    
T  25009492 ggacgatttgcaaaaacacgcgaaattacagggacgttttacatattaaagccttt 25009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 410
Target Start/End: Complemental strand, 26776340 - 26776309
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcct 410  Q
    ||||||||||||||||||||||||||||||||    
T  26776340 aaattacagggacggtttgcatatttaagcct 26776309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 4706664 - 4706634
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  4706664 aaattacagggacggtttgcatatttaagcc 4706634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Original strand, 4707497 - 4707527
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  4707497 aaattacagggacggtttgcatatttaagcc 4707527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 25009381 - 25009430
Alignment:
Q  247 gtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacggga 296  Q
    ||||||||||||||||||||    ||||||||||||| ||||||||||||    
T  25009381 gtgtgtctccgtctgccaccacaacgtttttgtaacgagagttaacggga 25009430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 44372642 - 44372675
Alignment:
Q  379 aaattacagggacggtttgcatatttaagccttt 412  Q
    ||||||||||||||| ||||||||||||||||||    
T  44372642 aaattacagggacggattgcatatttaagccttt 44372675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 44381498 - 44381531
Alignment:
Q  379 aaattacagggacggtttgcatatttaagccttt 412  Q
    ||||||||||||||| ||||||||||||||||||    
T  44381498 aaattacagggacggattgcatatttaagccttt 44381531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 8230100 - 8230060
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttattttaa 419  Q
    |||||||||||||| ||| ||||||||||||||| ||||||    
T  8230100 aaattacagggacgatttacatatttaagccttttttttaa 8230060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 28849870 - 28849914
Alignment:
Q  243 ccacgtgtgtctccgtctgccacctagccgtttttgtaacgggag 287  Q
    ||||||||||||||||||||||||    |||||||||||||||||    
T  28849870 ccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggag 28849914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 246 - 418
Target Start/End: Complemental strand, 45981571 - 45981398
Alignment:
Q  246 cgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacnn 345  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||||| |||| | |||||||  |  |  | ||||||||||   |||||||||      
T  45981571 cgtgtgtctccgtctgcaaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 45981472  T
Q  346 nnnnngataca-ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcctttatttta 418  Q
         |||||| |||||| |||||||||  |||||||||||| ||||| ||| |||||||||||||||||||||    
T  45981471 aaaaagatacaaggacgatttgcaaaaacacgcgaaattacaaggacgttttacatatttaagcctttatttta 45981398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 243 - 412
Target Start/End: Original strand, 8392695 - 8392865
Alignment:
Q  243 ccacgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaaacga-aaaaagcttacaaggagagttttgaa 341  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||| |||  | |||| ||||||     | ||||||||||   |||||||    
T  8392695 ccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggatgaattgc-aaacgattggcaacttacaaggatgattttgaa 8392793  T
Q  342 acnnnnnnngataca-ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagccttt 412  Q
    ||       |||||| |||||| |||||||||  ||||||||||||||||||||||||||||| || |||||    
T  8392794 acaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacggtttgcatattaaaaccttt 8392865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 412
Target Start/End: Complemental strand, 8391454 - 8391398
Alignment:
Q  356 aggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagccttt 412  Q
    ||||||| |||||||||  |||||||||||||||||| ||| |||||||||||||||    
T  8391454 aggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagccttt 8391398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 25166775 - 25166808
Alignment:
Q  379 aaattacagggacggtttgcatatttaagccttt 412  Q
    ||||||||||||||||||||||||||||||||||    
T  25166775 aaattacagggacggtttgcatatttaagccttt 25166808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 53529552 - 53529600
Alignment:
Q  368 aaaaatgcgcgaaattacagggacggtttgcatatttaagcctttattt 416  Q
    |||||| ||| |||||||||||||| ||| |||||||||||||||||||    
T  53529552 aaaaatacgccaaattacagggacgatttacatatttaagcctttattt 53529600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 412
Target Start/End: Complemental strand, 52935718 - 52935683
Alignment:
Q  377 cgaaattacagggacggtttgcatatttaagccttt 412  Q
    ||||||||||||||||| ||||||||||||||||||    
T  52935718 cgaaattacagggacggattgcatatttaagccttt 52935683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Original strand, 20289619 - 20289649
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  20289619 aaattacagggacggtttgcatatttaagcc 20289649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 25165929 - 25165899
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  25165929 aaattacagggacggtttgcatatttaagcc 25165899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 3990147 - 3990115
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctt 411  Q
    |||||||||| ||||||||||||||||||||||    
T  3990147 aaattacaggaacggtttgcatatttaagcctt 3990115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 39452000 - 39451968
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctt 411  Q
    ||||||||||||||| |||||||||||||||||    
T  39452000 aaattacagggacggattgcatatttaagcctt 39451968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 47721940 - 47721976
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttatt 415  Q
    ||||||||||||| | |||||||||||||||||||||    
T  47721940 aaattacagggactgattgcatatttaagcctttatt 47721976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 246 - 411
Target Start/End: Original strand, 39929249 - 39929415
Alignment:
Q  246 cgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacnn 345  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||| |||| | |||||||  |  |  | ||||||||||   |||||||||      
T  39929249 cgtgtgtctccgtctgccaccataacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 39929348  T
Q  346 nnnnngataca-ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcctt 411  Q
         |||||| |||||| |||||||||  |||||||||||| ||||| ||| ||||||||||||||    
T  39929349 aaaaagatacagggacgatttgcaaaaacacgcgaaattacatggacgttttacatatttaagcctt 39929415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 39927985 - 39927926
Alignment:
Q  357 ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcctttattt 416  Q
    |||||| |||||||||  |||||||||||||||||| |||||||||| |||||| |||||    
T  39927985 ggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattaaagcctatattt 39927926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 13508121 - 13508190
Alignment:
Q  11 gtgagatgaaaaatttggcagaaagatgaagaaggtagtaggtgagagatgcagaacaaataaacagagg 80  Q
    |||||||||| || ||| ||||||||||||||||| | | ||||||||||| | |||||| |||||||||    
T  13508121 gtgagatgaagaaattgacagaaagatgaagaaggaattgggtgagagatgaataacaaaaaaacagagg 13508190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 412
Target Start/End: Complemental strand, 15807686 - 15807653
Alignment:
Q  379 aaattacagggacggtttgcatatttaagccttt 412  Q
    ||||||||||||||||||||||||||||||||||    
T  15807686 aaattacagggacggtttgcatatttaagccttt 15807653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 39928100 - 39928043
Alignment:
Q  243 ccacgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaagga 300  Q
    |||| |||||||||||||||||||    |||||||||||||||||||||||||| |||    
T  39928100 ccacatgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggaggga 39928043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 414
Target Start/End: Original strand, 4933348 - 4933395
Alignment:
Q  367 caaaaatgcgcgaaattacagggacggtttgcatatttaagcctttat 414  Q
    |||||||||||||| ||||||||||  ||| |||||||||||||||||    
T  4933348 caaaaatgcgcgaacttacagggaccttttacatatttaagcctttat 4933395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 418
Target Start/End: Complemental strand, 44251635 - 44251596
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttatttta 418  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  44251635 aaattacagggacgatttacatatttaagcctttatttta 44251596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 410
Target Start/End: Complemental strand, 52477675 - 52477644
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcct 410  Q
    ||||||||||||||||||||||||||||||||    
T  52477675 aaattacagggacggtttgcatatttaagcct 52477644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 417
Target Start/End: Complemental strand, 4906171 - 4906121
Alignment:
Q  367 caaaaatgcgcgaaattacagggacggtttgcatatttaagcctttatttt 417  Q
    |||||||||||||| ||||||||||  ||| ||||||||||||||| ||||    
T  4906171 caaaaatgcgcgaacttacagggaccttttacatatttaagcctttttttt 4906121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 413
Target Start/End: Complemental strand, 29756314 - 29756268
Alignment:
Q  367 caaaaatgcgcgaaattacagggacggtttgcatatttaagccttta 413  Q
    |||||||||||||| ||||||||||  ||| ||||||||||||||||    
T  29756314 caaaaatgcgcgaacttacagggaccttttacatatttaagccttta 29756268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 47864519 - 47864489
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  47864519 aaattacagggacggtttgcatatttaagcc 47864489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 4900287 - 4900255
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctt 411  Q
    ||||||||||||||| |||||||||||||||||    
T  4900287 aaattacagggacggattgcatatttaagcctt 4900255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 410
Target Start/End: Complemental strand, 47848268 - 47848240
Alignment:
Q  382 ttacagggacggtttgcatatttaagcct 410  Q
    |||||||||||||||||||||||||||||    
T  47848268 ttacagggacggtttgcatatttaagcct 47848240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 52502435 - 52502407
Alignment:
Q  379 aaattacagggacggtttgcatatttaag 407  Q
    |||||||||||||||||||||||||||||    
T  52502435 aaattacagggacggtttgcatatttaag 52502407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 411
Target Start/End: Original strand, 52503534 - 52503566
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctt 411  Q
    ||||||||||||| |||||||||||||||||||    
T  52503534 aaattacagggacagtttgcatatttaagcctt 52503566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 246 - 409
Target Start/End: Complemental strand, 193755 - 193591
Alignment:
Q  246 cgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacnn 345  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||| |||| | |||||||  |  |  | ||||||||||   |||||||||      
T  193755 cgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctattaacttacaaggatgattttgaaacaa 193656  T
Q  346 nnnnngataca-ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcc 409  Q
         |||||| |||||| |||||||||  ||||||||||||| |||| ||| ||||||||||||    
T  193655 aaaaagatacagggacgatttgcaaaaacacgcgaaattacagagacgttttacatatttaagcc 193591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 246 - 409
Target Start/End: Complemental strand, 42775584 - 42775420
Alignment:
Q  246 cgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacnn 345  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||| |||| | |||||||  |  |  | ||||||||||   |||||||||      
T  42775584 cgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 42775485  T
Q  346 nnnnngatac-aggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcc 409  Q
         ||||| ||||||| |||||||||  |||||||||||||| ||| ||| ||||||||||||    
T  42775484 aaaaagatacaaggacgatttgcaaaaacacgcgaaattacaggaacgttttacatatttaagcc 42775420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 42776825 - 42776880
Alignment:
Q  357 ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagccttt 412  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  42776825 ggacgatttgcaaaaacacgcgaaattacagggacggtttgcatattaaagccttt 42776880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 412
Target Start/End: Complemental strand, 35988885 - 35988852
Alignment:
Q  379 aaattacagggacggtttgcatatttaagccttt 412  Q
    ||||||||||||||||||||||||||||||||||    
T  35988885 aaattacagggacggtttgcatatttaagccttt 35988852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 4285760 - 4285795
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttat 414  Q
    |||||||||||||||||| |||||||||||||||||    
T  4285760 aaattacagggacggtttacatatttaagcctttat 4285795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 410
Target Start/End: Original strand, 30381603 - 30381634
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcct 410  Q
    ||||||||||||||||||||||||||||||||    
T  30381603 aaattacagggacggtttgcatatttaagcct 30381634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 425
Target Start/End: Original strand, 15795752 - 15795798
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttattttaaaacaat 425  Q
    ||||||||||||| |||||||||||||||||| | ||||||| ||||    
T  15795752 aaattacagggacagtttgcatatttaagcctatcttttaaatcaat 15795798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 23911943 - 23911911
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctt 411  Q
    |||||| ||||||||||||||||||||||||||    
T  23911943 aaattaaagggacggtttgcatatttaagcctt 23911911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 246 - 409
Target Start/End: Complemental strand, 20587203 - 20587039
Alignment:
Q  246 cgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacnn 345  Q
    |||||||||||||||||||||    |||||||||||||||||||||| ||| |||| | |||||||  |  |  | ||||||||||   |||||||||      
T  20587203 cgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacaggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 20587104  T
Q  346 nnnnngataca-ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcc 409  Q
         |||||| |||||| |||||||||  |||||||||||||||||| ||| ||||||||||||    
T  20587103 aaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcc 20587039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 409
Target Start/End: Original strand, 20588351 - 20588518
Alignment:
Q  243 ccacgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaaacga-aaaaagcttacaaggagagttttgaa 341  Q
    |||||||||||| |||||||||||    |||||||||||||||||||||||||| |||| | |||| ||||||     | ||||||||||   |||||||    
T  20588351 ccacgtgtgtctacgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgc-aaacgattggcaacttacaaggatgattttgaa 20588449  T
Q  342 acnnnnnnngatacag-gacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcc 409  Q
    ||       ||||||| ||||| |||||||||  |||||||||||||||||| ||| ||||||||||||    
T  20588450 acaaaaaaagatacagagacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcc 20588518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 2238851 - 2238888
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttattt 416  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2238851 aaattacagggacggtttgcatatttaagcctttattt 2238888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 416
Target Start/End: Complemental strand, 43516439 - 43516391
Alignment:
Q  368 aaaaatgcgcgaaattacagggacggtttgcatatttaagcctttattt 416  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  43516439 aaaaatgcgcgaaattacagggaccttttacatatttaagcctttattt 43516391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 21716470 - 21716438
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctt 411  Q
    |||||||||||||||||||||||||||||||||    
T  21716470 aaattacagggacggtttgcatatttaagcctt 21716438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 411
Target Start/End: Original strand, 21720227 - 21720259
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctt 411  Q
    |||||||||||||||||||||||||||||||||    
T  21720227 aaattacagggacggtttgcatatttaagcctt 21720259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 3149949 - 3149914
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttat 414  Q
    |||||||| |||||||||||||||||||||||||||    
T  3149949 aaattacaaggacggtttgcatatttaagcctttat 3149914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 410
Target Start/End: Original strand, 28917134 - 28917165
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcct 410  Q
    ||||||||||||||||||||||||||||||||    
T  28917134 aaattacagggacggtttgcatatttaagcct 28917165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 2238012 - 2237982
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  2238012 aaattacagggacggtttgcatatttaagcc 2237982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 24558870 - 24558832
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttatttt 417  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  24558870 aaattacagggacagtttgcatatttaagcctttttttt 24558832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Original strand, 24559581 - 24559611
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  24559581 aaattacagggacggtttgcatatttaagcc 24559611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 28916315 - 28916285
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  28916315 aaattacagggacggtttgcatatttaagcc 28916285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 408
Target Start/End: Complemental strand, 29090920 - 29090891
Alignment:
Q  379 aaattacagggacggtttgcatatttaagc 408  Q
    ||||||||||||||||||||||||||||||    
T  29090920 aaattacagggacggtttgcatatttaagc 29090891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 22054376 - 22054332
Alignment:
Q  367 caaaaatgcgcgaaattacagggacggtttgcatatttaagcctt 411  Q
    |||||||||||||| ||||||||||  ||| ||||||||||||||    
T  22054376 caaaaatgcgcgaacttacagggaccttttacatatttaagcctt 22054332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 44820948 - 44820992
Alignment:
Q  368 aaaaatgcgcgaaattacagggacggtttgcatatttaagccttt 412  Q
    ||||||||||||| ||||||||||  ||| |||||||||||||||    
T  44820948 aaaaatgcgcgaatttacagggaccttttacatatttaagccttt 44820992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 10337 - 10406
Alignment:
Q  242 gccacgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaa 311  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||| |||| | |||||||    
T  10337 gccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaa 10406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 9187 - 9119
Alignment:
Q  243 ccacgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaa 311  Q
    ||||||||||||| ||||||||||    |||||||||||||||||||||||||| |||| | |||||||    
T  9187 ccacgtgtgtctctgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaa 9119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 8903 - 9029
Alignment:
Q  185 tctagccactccccaactcttttgacacgtaacactccttttgccaggtcacagtaagccacgtgtgtctccgtctgccacctagccgtttttgtaacgg 284  Q
    |||||||||||  || |||| ||||||| |||||   |||||||||  ||||| |   |||||||||||||||||| |||||    ||||||||||||||    
T  8903 tctagccactcatcatctctcttgacacataacaaagcttttgccaactcacacttcaccacgtgtgtctccgtctaccaccacaacgtttttgtaacgg 9002  T
Q  285 gagttaacgggaaggaccatttgcaaa 311  Q
    |||||||||||| |||| | |||||||    
T  9003 gagttaacgggagggacgaattgcaaa 9029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 7750 - 7701
Alignment:
Q  357 ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaa 406  Q
    |||||| |||||||||  |||||||||||||||||| ||| |||||||||    
T  7750 ggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaa 7701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 9069 - 9129
Alignment:
Q  351 gatacagg-acgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcct 410  Q
    |||||||| |||| |||||||||  ||| |||||||||||||| |||||||||| ||||||    
T  9069 gatacagggacgatttgcaaaaacacgcaaaattacagggacgttttgcatattaaagcct 9129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 35506824 - 35506888
Alignment:
Q  247 gtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaa 311  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||| |||| | |||||||    
T  35506824 gtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaa 35506888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 411
Target Start/End: Original strand, 23154338 - 23154370
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctt 411  Q
    |||||||||||||||||||||||||||||||||    
T  23154338 aaattacagggacggtttgcatatttaagcctt 23154370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 9898994 - 9898956
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttatttt 417  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  9898994 aaattacagggacggtttgcatatttaaacctttttttt 9898956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 11761068 - 11761038
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  11761068 aaattacagggacggtttgcatatttaagcc 11761038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 21142520 - 21142470
Alignment:
Q  368 aaaaatgcgcgaaattacagggacggtttgcatatttaagcctttatttta 418  Q
    ||||||||||||| ||||||||||  ||| ||||||||||| |||||||||    
T  21142520 aaaaatgcgcgaacttacagggaccttttacatatttaagcttttatttta 21142470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 23153578 - 23153548
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  23153578 aaattacagggacggtttgcatatttaagcc 23153548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 26635540 - 26635510
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  26635540 aaattacagggacggtttgcatatttaagcc 26635510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 359332 - 359377
Alignment:
Q  368 aaaaatgcgcgaaattacagggacggtttgcatatttaagccttta 413  Q
    ||||||||||||| ||||||||||  ||| ||||||||||||||||    
T  359332 aaaaatgcgcgaacttacagggaccttttacatatttaagccttta 359377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 35750759 - 35750804
Alignment:
Q  242 gccacgtgtgtctccgtctgccacctagccgtttttgtaacgggag 287  Q
    |||||||||||||||||||||||||    |||||||||||||||||    
T  35750759 gccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggag 35750804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 411
Target Start/End: Original strand, 17132769 - 17132801
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctt 411  Q
    ||||||||||||| |||||||||||||||||||    
T  17132769 aaattacagggacagtttgcatatttaagcctt 17132801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 35505689 - 35505621
Alignment:
Q  243 ccacgtgtgtctccgtctgccacctagccgtttttgtaacgggagttaacgggaaggaccatttgcaaa 311  Q
    |||||| |||||||||||||||||    | |||||||| ||||||||||||||| |||| | |||||||    
T  35505689 ccacgtctgtctccgtctgccaccacaacatttttgtagcgggagttaacgggagggacgaattgcaaa 35505621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 37586752 - 37586724
Alignment:
Q  379 aaattacagggacggtttgcatatttaag 407  Q
    |||||||||||||||||||||||||||||    
T  37586752 aaattacagggacggtttgcatatttaag 37586724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 8277 - 8331
Alignment:
Q  357 ggacgaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcctt 411  Q
    |||||| |||||||||  |||||||||||||||||| |||||||||| |||||||    
T  8277 ggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattcaagcctt 8331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 421
Target Start/End: Original strand, 24052024 - 24052066
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttattttaaaa 421  Q
    |||||||||||||||||||||||||||||| ||| ||||||||    
T  24052024 aaattacagggacggtttgcatatttaagctttttttttaaaa 24052066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 412
Target Start/End: Complemental strand, 6159784 - 6159751
Alignment:
Q  379 aaattacagggacggtttgcatatttaagccttt 412  Q
    ||||||||||||||||||||||||||||||||||    
T  6159784 aaattacagggacggtttgcatatttaagccttt 6159751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 418
Target Start/End: Complemental strand, 9698479 - 9698440
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttatttta 418  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  9698479 aaattaaagggacggtttgcatatttaagcctttaattta 9698440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 410
Target Start/End: Complemental strand, 24051285 - 24051254
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcct 410  Q
    ||||||||||||||||||||||||||||||||    
T  24051285 aaattacagggacggtttgcatatttaagcct 24051254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 410
Target Start/End: Original strand, 28302193 - 28302224
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcct 410  Q
    ||||||||||||||||||||||||||||||||    
T  28302193 aaattacagggacggtttgcatatttaagcct 28302224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 410
Target Start/End: Complemental strand, 28509880 - 28509849
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcct 410  Q
    ||||||||||||||||||||||||||||||||    
T  28509880 aaattacagggacggtttgcatatttaagcct 28509849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 417
Target Start/End: Original strand, 843538 - 843588
Alignment:
Q  367 caaaaatgcgcgaaattacagggacggtttgcatatttaagcctttatttt 417  Q
    |||||||||||||| ||||||||||  ||| ||||||||||||||| ||||    
T  843538 caaaaatgcgcgaacttacagggaccttttacatatttaagcctttttttt 843588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Original strand, 29979254 - 29979284
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  29979254 aaattacagggacggtttgcatatttaagcc 29979284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 19596385 - 19596337
Alignment:
Q  367 caaaaatgcgcgaaattacagggacggtttgcatatttaagcctttatt 415  Q
    |||||||||||||| ||| ||||||  ||| ||||||||||||||||||    
T  19596385 caaaaatgcgcgaacttatagggacaatttacatatttaagcctttatt 19596337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 21634386 - 21634422
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcctttatt 415  Q
    |||||| |||||||| |||||||||||||||||||||    
T  21634386 aaattatagggacggattgcatatttaagcctttatt 21634422  T

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Target: scaffold0141 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 410
Target Start/End: Complemental strand, 10336 - 10305
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcct 410  Q
    ||||||||||||||||||||||||||||||||    
T  10336 aaattacagggacggtttgcatatttaagcct 10305  T

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Target: scaffold0765 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 409
Target Start/End: Original strand, 386 - 416
Alignment:
Q  379 aaattacagggacggtttgcatatttaagcc 409  Q
    |||||||||||||||||||||||||||||||    
T  386 aaattacagggacggtttgcatatttaagcc 416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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