View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_110 (Length: 248)
Name: NF16020_high_110
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_110 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 11473222 - 11473049
Alignment:
| Q |
57 |
aagtatatatttatgttagaatcctttctttagacttatatcaaaagaaagcaacatataagtgtacatatgaattgcacaaaagtcatagcatgcatca |
156 |
Q |
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| T |
11473222 |
aagtatatacttatgttagaatcctttctttagacttatatcaaaagaaagcaacatataagtgtacatatgaattgcacaaaagtcataacatgtatta |
11473123 |
T |
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| Q |
157 |
ggccgagactctgataccaattgatgtgatttcaacaaatttgtaggaaatacaatatataacaaatgatcatg |
230 |
Q |
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| T |
11473122 |
ggccgagacactaataccaattgatgtgatttcaacaaatttgtaggaaatacaatatataacaaatgatcatg |
11473049 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 11473295 - 11473234
Alignment:
| Q |
12 |
atgaacaagtatattcgaaagtaaaattacataactcgaagaaccaagtatatatttatgtt |
73 |
Q |
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| T |
11473295 |
atgaacaagtatattcgaaagtaaaattacataactcgaagaactaagtatatacttatgtt |
11473234 |
T |
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