View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16020_high_113 (Length: 247)

Name: NF16020_high_113
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16020_high_113
NF16020_high_113
[»] scaffold0459 (1 HSPs)
scaffold0459 (1-240)||(4545-4784)
[»] scaffold0366 (1 HSPs)
scaffold0366 (1-240)||(4545-4784)


Alignment Details
Target: scaffold0459 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4784 - 4545
Alignment:
Q  1 tgagtttttgcaggtttatcctcataaacttgattcaaactagaatgtgatattacatggtaaccgtgactgtccaatccaatgcaactaatagagtttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784 tgagtttttgcaggtttatcctcataaacttgattcaaactagaatgtgatattacatggtaaccgtgactgtccaatccaatgcaactaatagagtttc 4685  T
Q  101 ctcctcttaaagaatacatccatgaagatcaagtgttgcaatataaattttctacgtgatgttagtggaatttgtaagtaacattagaatataagtagtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684 ctcctcttaaagaatacatccatgaagatcaagtgttgcaatataaattttctacgtgatgttagtggaatttgtaagtaacattagaatataagtagtg 4585  T
Q  201 aaaagttggtactctagttacatatatattattccctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4584 aaaagttggtactctagttacatatatattattccctatg 4545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4784 - 4545
Alignment:
Q  1 tgagtttttgcaggtttatcctcataaacttgattcaaactagaatgtgatattacatggtaaccgtgactgtccaatccaatgcaactaatagagtttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784 tgagtttttgcaggtttatcctcataaacttgattcaaactagaatgtgatattacatggtaaccgtgactgtccaatccaatgcaactaatagagtttc 4685  T
Q  101 ctcctcttaaagaatacatccatgaagatcaagtgttgcaatataaattttctacgtgatgttagtggaatttgtaagtaacattagaatataagtagtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684 ctcctcttaaagaatacatccatgaagatcaagtgttgcaatataaattttctacgtgatgttagtggaatttgtaagtaacattagaatataagtagtg 4585  T
Q  201 aaaagttggtactctagttacatatatattattccctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4584 aaaagttggtactctagttacatatatattattccctatg 4545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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