View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_118 (Length: 238)
Name: NF16020_high_118
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_118 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43893760 - 43893976
Alignment:
| Q |
1 |
tttttattacatgaaacttacttttaattgatataattaattaaacattgttcaatacatggaggatagaactcaaaaacacggagacttgtccaagaac |
100 |
Q |
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| T |
43893760 |
tttttattacatgaaacttacttttaattgatataattaattaaacattgttcaatacatgaaggatagaactcaaaaacacggagacttgtccaagaac |
43893859 |
T |
|
| Q |
101 |
aagtcgtcccaattaaatcatatttacttaacaaactccaccttaaaataaaataaaatataaacaaacttagcaacaatagtctgaaattcagagttgt |
200 |
Q |
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| T |
43893860 |
aagtcgtcccaattaaatcatatttacttaacaaacttcacct-----taaaataaaatataaacaaacttagcaacaatagtctgaaattcagagttgt |
43893954 |
T |
|
| Q |
201 |
catgacgatgggacgacaaggt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
43893955 |
catgacgatgggacgacaaggt |
43893976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 35013905 - 35013847
Alignment:
| Q |
31 |
atataattaattaaacattgttcaatacatggaggatagaactcaaaaacacggagact |
89 |
Q |
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| T |
35013905 |
atatcattaattacatattgttcaatacatggaggatagaactcaaaaacacggcgact |
35013847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 15310919 - 15310841
Alignment:
| Q |
23 |
tttaattgatataattaattaaacattgttcaatacatggaggatagaactcaaaaacacggagacttgtccaagaaca |
101 |
Q |
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| T |
15310919 |
tttaactgatatcattaattaaacattgttcaatacatgtaggatagaactcaataatacagcgactagtccaagaaca |
15310841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 15310975 - 15310923
Alignment:
| Q |
24 |
ttaattgatataattaattaaacattgttcaatacatggaggatagaactcaa |
76 |
Q |
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| T |
15310975 |
ttaactgatatcatcaattaaacattgtttaatacatgtaggatagaactcaa |
15310923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 17371777 - 17371736
Alignment:
| Q |
48 |
ttgttcaatacatggaggatagaactcaaaaacacggagact |
89 |
Q |
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| T |
17371777 |
ttgttcaatacatggaggatataactcaaaaatacggtgact |
17371736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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