View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_125 (Length: 226)
Name: NF16020_high_125
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_125 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 13890313 - 13890523
Alignment:
| Q |
1 |
ggaagaaagagagagtatatagtgaaatgagaatgactggtatcttcatttttgcgtaagaagaatttgatcatagcatagcatagcttggtaacgataa |
100 |
Q |
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| T |
13890313 |
ggaagaaagagagagtatagagtgaaatgagaatgactagtatcttcatttttgcgtaagaagaatgtgatcatagcatagcatagcttggtaacgatga |
13890412 |
T |
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| Q |
101 |
aagtgatgtttctgttcatgaaagttgaagaggttagtggcagtttcgaaagcggttcgaattgcgggaacctctcaattgtattcatatacatcatatt |
200 |
Q |
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| T |
13890413 |
----gatatttctgttcatgaaagttgaagaggttagtggcagttccgaaagcggttcgaattgcgggaacctatcaattgtattcatatacatcatatt |
13890508 |
T |
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| Q |
201 |
aatctaaccattcat |
215 |
Q |
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| T |
13890509 |
aatctaaccattcat |
13890523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 14030438 - 14030648
Alignment:
| Q |
1 |
ggaagaaagagagagtatatagtgaaatgagaatgactggtatcttcatttttgcgtaagaagaatttgatcatagcatagcatagcttggtaacgataa |
100 |
Q |
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| T |
14030438 |
ggaagaaagagagagtatagagtgaaatgagaatgactagtatcttcatttttgcgtaagaagaatgtgatcatagcatagcatagcttggtaacgatga |
14030537 |
T |
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| Q |
101 |
aagtgatgtttctgttcatgaaagttgaagaggttagtggcagtttcgaaagcggttcgaattgcgggaacctctcaattgtattcatatacatcatatt |
200 |
Q |
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| T |
14030538 |
----gatatttctgttcatgaaagttgaagaggttagtggcagttccgaaagcggttcgaattgcgggaacctatcaattgtattcatatacatcatatt |
14030633 |
T |
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| Q |
201 |
aatctaaccattcat |
215 |
Q |
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| T |
14030634 |
aatctaaccattcat |
14030648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7691586 - 7691638
Alignment:
| Q |
1 |
ggaagaaagagagagtatatagtgaaatgagaatgactggtatcttcattttt |
53 |
Q |
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|||||||||||||| ||| |||||||||||||||| | |||||||||||||| |
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| T |
7691586 |
ggaagaaagagagaacataaagtgaaatgagaatgagtagtatcttcattttt |
7691638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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