View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_13 (Length: 545)
Name: NF16020_high_13
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 115 - 534
Target Start/End: Original strand, 38931258 - 38931675
Alignment:
| Q |
115 |
tacatgatcaaaagtttacttagcctaaaaaactaaaatattgtacataatttttattatttgtgcatgcgtacgtagaaaaagcctgtatatattagtn |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38931258 |
tacatgatcaaaagtttacttaacctaaaaaactaacacattgtacataatttttattattt----atgcgtacgtagaaaaagcctgtatatattagta |
38931353 |
T |
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| Q |
215 |
nnnnnnnnnnnnn--ggcatgtatatattgtgctattgtagattttattgtacgcaaaagctagacactcgattcttggataactttgtagatgataggt |
312 |
Q |
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| T |
38931354 |
aaaaaaaaaaaaaaaggcatgtatatattgtgctattgtagattttattgtacgcaaaagctagacactcgattcttggataactttgttgatgataggt |
38931453 |
T |
|
| Q |
313 |
cttgctttacacattgcttctagtggattgagcttttgcgtgacgacccctattttattttctgtcatatctacttcttcatcatttaatcttttccatt |
412 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931454 |
cttgctttgcacattgcttctagtggattgagcttttgcgtgacgacccctattttattttctgtcatatctacttcttcatcatttaatcttttccatt |
38931553 |
T |
|
| Q |
413 |
caaaacactgaatcaataatcccaaactcaatgccattgtacgatgtgctaaacctattccagggcaacccctccttccaaaaccaaatgcaattaactt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931554 |
caaaacactgaatcaataatcccaaactcaatgccattgtacgatgtgctaaacctattccagggcaacccctccttccaaaaccaaatgcaattaactt |
38931653 |
T |
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| Q |
513 |
gtttgcttccccttctttttca |
534 |
Q |
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| T |
38931654 |
gtttgcttccccttctttttca |
38931675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 284 - 534
Target Start/End: Original strand, 12151302 - 12151552
Alignment:
| Q |
284 |
attcttggataactttgtagatgataggtcttgctttacacattgcttctagtggattgagcttttgcgtgacgacccctattttattttctgtcatatc |
383 |
Q |
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||||||||| |||||| | || ||| |||| |||||||||||||||||||| |||| | ||||||| | |||| |||||| | ||||||||| |||||| |
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| T |
12151302 |
attcttggacaactttcttgacgattggtcgtgctttacacattgcttctaatggaataagcttttccatgacaacccctgtactattttctgccatatc |
12151401 |
T |
|
| Q |
384 |
tacttcttcatcatttaatcttttccattcaaaacactgaatcaataatcccaaactcaatgccattgtacgatgtgctaaacctattccagggcaaccc |
483 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||| |||||||||||||| ||| || |
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| T |
12151402 |
tatttcttcatcatttaatcgtttccattcaaaacactgaatcaacaatgccaaactcaaccacattgtacgatatgccaaacctattccaggacaagcc |
12151501 |
T |
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| Q |
484 |
ctccttccaaaaccaaatgcaattaacttgtttgcttccccttctttttca |
534 |
Q |
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|| |||||||||||||||||||||||||| ||| | || |||||||||||| |
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| T |
12151502 |
cttcttccaaaaccaaatgcaattaacttatttacctcaccttctttttca |
12151552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 38931159 - 38931193
Alignment:
| Q |
16 |
aaaacctctaggcaaaggcaccagtgtgttaacct |
50 |
Q |
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| T |
38931159 |
aaaacctctaggcaaaggcaccagtgtgttaacct |
38931193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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