View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16020_high_22 (Length: 497)
Name: NF16020_high_22
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 205 - 485
Target Start/End: Complemental strand, 9080846 - 9080568
Alignment:
| Q |
205 |
tggaaattgtagtgatttttaaatttttagtcgtaaaaaatcttacccgataacatgagatttctcaagattttcttttcttatctcttagttgtgtgcc |
304 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
9080846 |
tggacattgtagtgatttttaaatctttagtcgtaaaaaatcttacccgataacatgagatttctcaagattttcctttcttgtctcttagttgtgtgcc |
9080747 |
T |
|
| Q |
305 |
tttaaatcgctctcctttctcccccatttccccccaacatttgtcttctttttaaaaccaaaattggtatgtcaaagcatcaatgtggaatctatcatcc |
404 |
Q |
| |
|
|||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9080746 |
tttacatctctctcctttctcccc-atttccccccaacatttgtcttctttt-aaaaccaaaattggtatgtcaaagcatcaatgtggaatctatcatcc |
9080649 |
T |
|
| Q |
405 |
ctactgttatcactcaacctaacataaatcgcaaaaatacttggtcattagtgataaatataacacttctttttcatatca |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9080648 |
ctactgttatcactcaacctaacataaatcgcaaaaatacttggtcattagtgataaatataacacttctttttcatatca |
9080568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 9081006 - 9080843
Alignment:
| Q |
19 |
tctataagctgatattttgggagtctcaacttaccatattgttttgttgtagttctcctttcttccgggattcggtcgtgtctaaatctagtggtattca |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9081006 |
tctataagctgatattttgggagtctcgacttaccatattgttttgttgtagttctcctttcttccgggcttcggtcgtgtctaaatctagtggtattca |
9080907 |
T |
|
| Q |
119 |
atcaagattttttatgaaatataaaaagtcttgtagtgtttaaaaacattttaacattggtgga |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9080906 |
atcaagattttttatgaaatataaaaagtcttgtagtgtttaaaaacattttaacattggtgga |
9080843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 96 - 279
Target Start/End: Original strand, 10859927 - 10860110
Alignment:
| Q |
96 |
gtgtctaaatctagtggtattcaatcaagattttttatgaaatataaaaagtcttgtagtgtttaaaaacattttaacattggtggattgttttataaat |
195 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||| || || || ||||||||| || ||||||||| ||||||||| | |||||||||||||| || |
|
|
| T |
10859927 |
gtgtctaaacctagtcgtattcaatcaagactttttacaaattacaacaagtcttgtggtatttaaaaactttttaacatcgatggattgttttatatat |
10860026 |
T |
|
| Q |
196 |
tagatttgttggaaattgtagtgatttttaaatttttagtcgtaaaaaatcttacccgataacatgagatttctcaagattttc |
279 |
Q |
| |
|
||||||||||||| |||||||||| |||| || |||||||| ||||| | || ||| |||||||||||||||| | ||||||| |
|
|
| T |
10860027 |
tagatttgttggacattgtagtgactttttaacttttagtcataaaatgtgttgccctataacatgagatttcttaggattttc |
10860110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 308
Target Start/End: Original strand, 10506330 - 10506457
Alignment:
| Q |
178 |
gtggattgttttataaattagatttgttggaaattgtagtgatttttaaatttttagtcgtaaaaaatcttacccgataacatgagatttctcaagattt |
277 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| |||||||||| ||| ||||| | || |||||| | ||||| |||||||||||||||| ||||| |
|
|
| T |
10506330 |
gtggatagttttataaattatatttgttggacattgtagtgacttt--aatttattatcataaaaagttttaccttataacatgagatttcttgggattt |
10506427 |
T |
|
| Q |
278 |
tcttttcttatctcttagttgtgtgccttta |
308 |
Q |
| |
|
|| || |||| |||||||||| |||||||| |
|
|
| T |
10506428 |
tccatttttat-tcttagttgtatgccttta |
10506457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 278
Target Start/End: Original strand, 33601754 - 33601876
Alignment:
| Q |
157 |
tttaaaaacattttaacattggtggattgttttataaattagatttg-ttggaaattgtagtgatttttaaatttttagtcgtaaaaaatcttacccgat |
255 |
Q |
| |
|
||||||||| |||||| || ||| |||||||||||||||| ||||| ||||| |||||||||| |||| ||||| | ||| |||||| |||||| || |
|
|
| T |
33601754 |
tttaaaaactttttaatatcagtgaattgttttataaattaaatttggttggacattgtagtgactttttaatttcttgtcacaaaaaaccttaccttat |
33601853 |
T |
|
| Q |
256 |
aacatgagatttctcaagatttt |
278 |
Q |
| |
|
|||||||||||||| | |||||| |
|
|
| T |
33601854 |
aacatgagatttcttaggatttt |
33601876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University