View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_24 (Length: 482)
Name: NF16020_high_24
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 1833132 - 1833581
Alignment:
| Q |
18 |
taacatttttaaagatctaacgattgtgattttttactctatcaatgtgcatgaattaaattttattgttattattgttgttattctattgannnnnnna |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |||||| | |
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| T |
1833132 |
taacatttttaaagatctaacgattgtgattttttactctatcaatgtacatgaattaaattttattattattgttgttgttattttattgattttttta |
1833231 |
T |
|
| Q |
118 |
cggtaaaaattgatattgtattgattaacatagctatttttaacatttgatagactaaaataaataaaaattgaatgaacatgatatttttgttgtatta |
217 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1833232 |
ccgtaaaaattgatattgtattgattaacatagctatttttaacatttgatagaataaaataaataaaaattgaatgagcatgatatttttgttgtatta |
1833331 |
T |
|
| Q |
218 |
aaaagttgaaagtatatttgtaccnnnnnnntaaaa--ttgaaagtatacttgtggttcaccaatccatctcattggggctgaagagaggccaacctctt |
315 |
Q |
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|||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1833332 |
aaaagttgaaagtatatttgtaacacaaaaaaaaaaaattgaaagtatacttgtggttcaccaatccatctcattggggctgaagagaggccaacctctt |
1833431 |
T |
|
| Q |
316 |
gttcatgtgaacttgtgtgccacagatcactaaggagcaggttgaactcaccatcataatgaaatggctcgctttggttctttggtaaatctattatcaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1833432 |
gttcatgtgaacttgtgtgccacagatcactaaggagcaggttgaactcaccatcataatcaaatggctcgctttggttctttggtaaatctattatcaa |
1833531 |
T |
|
| Q |
416 |
agaaccatacaaccctgctgctctctgcatacctagtgtccatgatagaa |
465 |
Q |
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| T |
1833532 |
agaaccatacaacccaggtgctctctgcatacctagtgtccatgatagaa |
1833581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 254 - 474
Target Start/End: Complemental strand, 35523518 - 35523297
Alignment:
| Q |
254 |
ttgaaagtatacttgtggttcaccaatccatctcattggggctgaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagc |
353 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35523518 |
ttgaaaatatacctgtggttcaccaatccatctcattggggcagaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagc |
35523419 |
T |
|
| Q |
354 |
aggttgaactcaccatcataatgaaatggctcgctttggttctttggtaaatctattatcaaagaaccatacaaccctgctgctctctgcatacc-tagt |
452 |
Q |
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|| |||||||||||||| |||||||||||||| |||||||||||||||||||| | ||| | |||||||||||||||||||||||| |||||||| |||| |
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| T |
35523418 |
agtttgaactcaccatcttaatgaaatggctctctttggttctttggtaaatccactattagagaaccatacaaccctgctgctctttgcataccatagt |
35523319 |
T |
|
| Q |
453 |
gtccatgatagaattatctacc |
474 |
Q |
| |
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||||||||||||| ||| |||| |
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| T |
35523318 |
gtccatgatagaaatatgtacc |
35523297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 261 - 474
Target Start/End: Complemental strand, 35506115 - 35505901
Alignment:
| Q |
261 |
tatacttgtggttcaccaatccatctcattggggctgaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcaggttga |
360 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35506115 |
tatacctgtggttcaccaatccatctcattggggcagaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcagattga |
35506016 |
T |
|
| Q |
361 |
actcaccatcataatgaaatggctcgctttggttctttggtaaatctattatcaaagaaccatacaaccctgctgctctctgcatacc-tagtgtccatg |
459 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||| | ||| | |||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
35506015 |
actcaccatcttaatgaaatggctctctttggttctttggtaaatccactattagagaaccatacaaccctgctgctctttgcataccatagtgtccatg |
35505916 |
T |
|
| Q |
460 |
atagaattatctacc |
474 |
Q |
| |
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|||||| ||| |||| |
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| T |
35505915 |
atagaaatatgtacc |
35505901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 261 - 474
Target Start/End: Complemental strand, 35535933 - 35535719
Alignment:
| Q |
261 |
tatacttgtggttcaccaatccatctcattggggctgaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcaggttga |
360 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35535933 |
tatacctgtggttcaccaatccatctcattggggcagaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcagattga |
35535834 |
T |
|
| Q |
361 |
actcaccatcataatgaaatggctcgctttggttctttggtaaatctattatcaaagaaccatacaaccctgctgctctctgcatacc-tagtgtccatg |
459 |
Q |
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|||||||||| |||||||||||||| |||||| ||||||||||||| | ||| | |||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
35535833 |
actcaccatcgtaatgaaatggctctctttggctctttggtaaatccactattagagaaccatacaaccctgctgctctttgcataccatagtgtccatg |
35535734 |
T |
|
| Q |
460 |
atagaattatctacc |
474 |
Q |
| |
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|||||| ||| |||| |
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|
| T |
35535733 |
atagaaatatgtacc |
35535719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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