View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16020_high_31 (Length: 429)
Name: NF16020_high_31
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_31 |
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| [»] scaffold0499 (1 HSPs) |
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| [»] scaffold0025 (1 HSPs) |
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| [»] scaffold1889 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 13100332 - 13100745
Alignment:
| Q |
1 |
acatgaatcaaagaagacaaaatttgtccttttgagaaggtatgcacaatattattatagtttattttcaatgaatttgttttgctttttggattgctat |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13100332 |
acatgaatcaaagaagacaaaatttgtctttttgtgaaggtatgcacaatattattatagtttattttcaatgaatttgttttgctttttggattgctat |
13100431 |
T |
|
| Q |
101 |
caaaagaattattattaattctgaattaatatttttatttactctcaaacaattatgtaagaaatcaatatctttttaaaaa--gtactaatttgaattt |
198 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13100432 |
caaaagaattattattaattctgaattaatatttt-atttactctcaaacaagtatgtaagaaatcaatatctttttaaaaaatgtactaatttgaattt |
13100530 |
T |
|
| Q |
199 |
tgatttttaatgtgttctcgtatgaacaaaatcaacctaaattgttaaaatttttgcatatcgattcctaatcaatttttatatctaaatcccttttatc |
298 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13100531 |
tgatttttgatgtgttctcgtatgaacaaaatcaacctaaattgttaaaaattttgcatatcgattcctaatcaatttttatatctaaatcccttttatc |
13100630 |
T |
|
| Q |
299 |
aatttttgtaccgaaattgtatgctcatcaattcaaattttctagaacttaataaaaattgttaatttttaaaagaaatgtcaattgttaatgatataat |
398 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13100631 |
aatttttgtaccgaaattgtatgctcatcaattcaaattttctagaacttaataaaaattgttaatttttaaaagaaatgtcaattgttaatgatataat |
13100730 |
T |
|
| Q |
399 |
aagcatagatcaaac |
413 |
Q |
| |
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||||||||||||||| |
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| T |
13100731 |
aagcatagatcaaac |
13100745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 248
Target Start/End: Original strand, 13110158 - 13110407
Alignment:
| Q |
4 |
tgaatcaaagaagacaaaatttgtccttttgagaaggtatgcacaatattattatagtttattttcaatgaatttgttttgctttttggattgctatcaa |
103 |
Q |
| |
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|||| ||||||||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13110158 |
tgaaacaaagaagacacaatttgtcttttggacaaggtatgcacaatattattatagtttattttcaatgaatttgttttgctttttggattcctatcaa |
13110257 |
T |
|
| Q |
104 |
aagaattattattaattctgaattaatatttttatttactctcaaacaattat-gtaagaaatcaatatctttttaaaa-----agtactaatttgaatt |
197 |
Q |
| |
|
||||||||||||||||||||| || ||| || ||||||||||||| ||| ||| ||||||||||||||||||||||||| | | |||||||| || |
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| T |
13110258 |
aagaattattattaattctgattttata-ttatatttactctcaatcaagtatcgtaagaaatcaatatctttttaaaagtatgaattataatttgagtt |
13110356 |
T |
|
| Q |
198 |
ttgatttttaatgtgttctcgtatgaacaaaatcaacctaaattgttaaaa |
248 |
Q |
| |
|
|| |||||| | || ||| ||||||||||||||||||||| ||||||||| |
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|
| T |
13110357 |
tttatttttgacgtactcttgtatgaacaaaatcaacctaatttgttaaaa |
13110407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 13149773 - 13149702
Alignment:
| Q |
80 |
ttttgctttttggattgctatcaaaagaattattattaattctgaattaatatttttatttactctcaaacaa |
152 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||| ||| |||||| ||||||||||||| |||||| |
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|
| T |
13149773 |
ttttgctttttggattgatatcaaaagaattattatttattttgacttaata-ttttatttactcttaaacaa |
13149702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 9945149 - 9945051
Alignment:
| Q |
52 |
ttattatagtttattttcaatgaatttgttttgctttttggattgctatcaaaagaattattattaattctgaattaatatttttatttactctcaaaca |
151 |
Q |
| |
|
||||||||| ||||||| ||| ||||| ||| | ||||||||||| |||||||| ||||||||| ||| | | |||||| ||||||||||||||||||| |
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|
| T |
9945149 |
ttattatagcttattttgaattaatttcttt-gttttttggattgatatcaaaaatattattatttatttttacttaata-ttttatttactctcaaaca |
9945052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 13171416 - 13171484
Alignment:
| Q |
80 |
ttttgctttttggattgctatcaaaagaattattattaattctgaattaatatttttatttactctcaaa |
149 |
Q |
| |
|
||||| ||||||||||| |||||||| || ||||||| ||| | | |||||| ||||||||||||||||| |
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| T |
13171416 |
ttttgttttttggattgatatcaaaataaatattatttattttaacttaata-ttttatttactctcaaa |
13171484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0499 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 4 - 413
Target Start/End: Complemental strand, 4825 - 4410
Alignment:
| Q |
4 |
tgaatcaaagaagacaaaatttgtccttttgagaaggtatgcacaatattattatagtttattttcaatgaatttgttttgctttttggattgctatcaa |
103 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
4825 |
tgaaacaaagaagacaaaatttgtctttttgagaaggtatgcacaattttattatagtttattttcaatgaatttgttttgctttttggattactatcaa |
4726 |
T |
|
| Q |
104 |
aagaattattattaattctgaattaatatttttatttactctcaaacaattat-gtaagaaatcaatatctttttaaaaagtactaatt------tgaat |
196 |
Q |
| |
|
|| ||| |||||||||||||| |||||||||| ||||||||| |||||| || |||||| |||||||||||||| ||||||||||||| ||||| |
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|
| T |
4725 |
aataataattattaattctgatttaatatttt-atttactctaaaacaagcatagtaagatatcaatatcttttttaaaagtactaattataatttgaat |
4627 |
T |
|
| Q |
197 |
tttgatttttaatgtgttctcgtatgaacaaaatcaacctaaattgttaaaatttttgcatatcgattcctaatcaatttttatatctaaatccctttta |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4626 |
tttgatttttgatgtgttctcgtatgaacaaaatcaacctaaattgttaaaaattttgcatatcgattcctaatcaatttttatatctaaatccctttta |
4527 |
T |
|
| Q |
297 |
tcaatttttgtaccgaaattgtatgctcatcaattcaaattttctagaacttaataaaaattgttaatttttaaaagaaatgtcaattgttaatgatata |
396 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4526 |
tcaatttttgtactaaaattgtatgctcatcaattcaaattttctagaactttataaaaattgttaatttttaaaagaaatgtcaattgttaatgatata |
4427 |
T |
|
| Q |
397 |
ataagcatagatcaaac |
413 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
4426 |
ataagcatggatcaaac |
4410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 4 - 248
Target Start/End: Complemental strand, 152832 - 152584
Alignment:
| Q |
4 |
tgaatcaaagaagacaaaatttgtccttttgagaaggtatgcacaatattattatagtttattttcaatgaatttgttttgctttttggattgctatcaa |
103 |
Q |
| |
|
|||| |||||| |||| |||||||| ||| || ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| ||||||| |
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|
| T |
152832 |
tgaaacaaagatgacacaatttgtcttttggacaaggtatgcacaatattattatattttattttcaatgaatttcttttgcgttttggattcctatcaa |
152733 |
T |
|
| Q |
104 |
aagaattattattaattctgaattaatatttttatttactctcaaacaattat-gtaagaaatcaatatctttttaaaaagtacta-----atttgaatt |
197 |
Q |
| |
|
||||||||||||||||||||| || ||||| | |||| || |||| ||| ||| ||||||||||||||||||||||||| |||||| ||||||||| |
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|
| T |
152732 |
aagaattattattaattctgattttatattat-attttctatcaatcaagtatcgtaagaaatcaatatctttttaaaa-gtactattataatttgaatt |
152635 |
T |
|
| Q |
198 |
ttgatttttaatgtgttctcgtatgaacaaaatcaacctaaattgttaaaa |
248 |
Q |
| |
|
||||||||| | ||| ||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
152634 |
ttgatttttgacgtgctcttgtatgaacaaaatcaacctaatttgttaaaa |
152584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1889 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1889
Description:
Target: scaffold1889; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 177 - 256
Alignment:
| Q |
98 |
tatcaaaagaattattattaattctgaattaatatttttatttactctcaaacaatta-tgtaagaaatcaatatcttttt |
177 |
Q |
| |
|
|||||||||| |||||||| ||| ||| ||||||| || |||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
177 |
tatcaaaagatttattatttattttgacttaatatctt-atttactctcaaacaagtaccataagaaatcaatatattttt |
256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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