View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_33 (Length: 428)
Name: NF16020_high_33
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_33 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 17396389 - 17396798
Alignment:
| Q |
19 |
tgtagaacccacttctacactagcatggtaaaaacaactccacgcctgagctatcatgttcaaatccttgaggcgcaaaaactttggtttgttattttct |
118 |
Q |
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| T |
17396389 |
tgtagaacacacttctacactagcatggtaaaaacaactccacgcctgagctatcatgttcaaatccttgaggcgcaaaaactttggtttgttattttct |
17396488 |
T |
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| Q |
119 |
ttttcaagaaccaactgcgttcctgctcccggtttacataaagcatttaacagcaagtcatgagtctctgcattcagctgttcagctctcattttctcga |
218 |
Q |
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| T |
17396489 |
ttttcaagaacccactgtgttcctgctcccggtttacataaagcatttaacagcatgtcgtaagtctctgcattcagctgttcagctctcattttctcga |
17396588 |
T |
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| Q |
219 |
cccaacattcaggtggagcagtcaaacctaacatagaattaataacatccccagaaagttttaaattcactcctcttaccatagactcaaattcaggatc |
318 |
Q |
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| T |
17396589 |
cccaacattcaggtggagcagtcaaacctaacatagaattaataacagccccagaaagtttcaaattcgcacctcttaccatagactcaaattcaggaac |
17396688 |
T |
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| Q |
319 |
agttgaagaagcattgctgtagaattctcttacccaagttttatcggcatccttgatacatgagtgaaagttctcccaattcctattttgcaattctttt |
418 |
Q |
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| T |
17396689 |
ggttgaagaagcattgctatagaattctcttacccaagttttattggcatccttgatacatgagtgaaagttctcccaattcctattttgcaattctttt |
17396788 |
T |
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| Q |
419 |
tcgatgaaag |
428 |
Q |
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| T |
17396789 |
tcgatgaaag |
17396798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 316
Target Start/End: Original strand, 17400039 - 17400213
Alignment:
| Q |
142 |
tgctcccggtttacataaagcatttaacagcaagtcatgagtctctgcattcagctgttcagctctcattttctcgacccaacattcaggtggagcagtc |
241 |
Q |
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||||||||||||||| |||| | ||| ||||| | | | ||||||||| ||||| ||| |||||||||||||||| |||||| || ||||| | ||| |
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| T |
17400039 |
tgctcccggtttacacaaagaacttatcagcatgccgtaggtctctgcactcagcggtttagctctcattttctcggcccaacgctccggtggggtggtc |
17400138 |
T |
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| Q |
242 |
aaacctaacatagaattaataacatccccagaaagttttaaattcactcctcttaccatagactcaaattcagga |
316 |
Q |
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| T |
17400139 |
aaacccaatgctgaattaatagcatccccagaaaatttcaaacttacccctcttacccaatactcatattcagga |
17400213 |
T |
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